Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1284g00124 ATGCCAGGGATGAGAAGCGGTGATGTTGAAGCCCAAAATCCAGAGTCACAAGAGAAGCAGGGTGACCTTGAAAAACCTACTGAGTCTGAAGAGAAGGTAGACTTTGATGGTGAAAATGATCAAGGCGATACCATGGAGGATGAAGTTGAATATGAAGAAGTAGAGGAGGAGGAGGAAGTGGAAGAGGAAGAGGAAGAGGAAGATGAAGAGGAGAGGGTGGAGGAAGAGACTGACGGGGCTGGCAATAGAAATGTTGCAGATACTGAGGATGAAGATGAGAAAAAGAAGCATGCAGAGCTTCTTGAACTTCCACCTCACGCGTCAGTGGTTTACATTGGTGGCATTCCTCACAATGCTTCTGAAGAGGATTTAAGGGACTTCTGTCAATCTGTGGGAGATGTATTTGAGGCTAAGATTATGAGGGGAAAAGAATCTGGGGAAGCGAAAGTTTATGCATTTGTGACCTTCAAGACAAAGGAGATGGCTTCTAACGCTATTGAGAAGCTGAACAAGTCTAAATTTCAGGGAAATGAAATAAAATGCTCAGCATCTAAAGAAAAACATAGGTTGTTTATTGGTAATATTCCTAAACACTGGACAGAGGAAGATTTGAGGAAGGCTATTACAGAAATTGGGCCTGGTGTCAATTCTGTTGAACTGATGAAGGAACCAAAGAATTCAGATCGTAATCGTGGATTTGCTTTTGTTGAGTATCACAATCATGAATGTGCAGAATATTCAAGGCAGAAGATGTCCAACTCAAAATTTAAACTCGACAGCAATGCTCCGACCGTGAAGTGGGCTGAACCTAAGAGTGCTGAATCGCCTGCAGCCTCCCAGGTAAAGGCCGTGTATGTAAAGAATCTGCCAGAAAGCATTACCCGGGATCGTCTTAAAGCGTTGTTTGAGCATCATGGAGAGATCACAAAAGTGGTACTCCCTCCTGCTAAAGCTGGCCATGAAAAGAGCAGATTTGGTTTTGTTCACTTCGCCGAGAAGTCATCAGCAAGGAAGGCGTTGGAGGGTACCGAGAAATATGAAATTTACGGCCAAGTTTTGGAGTGTTCACTTGCAAAACCACAAGCAGCTCAGAGGTCATCCAGGACACCGGTTTCACAGAGCTCAGTTGCACTGCCAACTTATCCATCTCAACTCGGTTATGGTTTGGTTGGAGGTGGCTATGGTTCTTTGGGTTCAAGATATGGTGCAGCTGGCTTTACACGACCGTTGGTCTATGGCAGGGGAGCGGCTTCTTCTGGTATGGCAATGATGCCTATGCTCTTACCTGATGGAAGGATTGGATATGTATTGCAACAGTCAGGATTGCAACAGCATTCCCGTCCACCGCCATCCCTTGGTGGCAGGAGAGGTGGCAGCTCCATTGGTGGGAGACGCAGTAATGACAGGAATCGGAGCCGATATCATCCCTACTAA 1434 0.4568 MPGMRSGDVEAQNPESQEKQGDLEKPTESEEKVDFDGENDQGDTMEDEVEYEEVEEEEEVEEEEEEEDEEERVEEETDGAGNRNVADTEDEDEKKKHAELLELPPHASVVYIGGIPHNASEEDLRDFCQSVGDVFEAKIMRGKESGEAKVYAFVTFKTKEMASNAIEKLNKSKFQGNEIKCSASKEKHRLFIGNIPKHWTEEDLRKAITEIGPGVNSVELMKEPKNSDRNRGFAFVEYHNHECAEYSRQKMSNSKFKLDSNAPTVKWAEPKSAESPAASQVKAVYVKNLPESITRDRLKALFEHHGEITKVVLPPAKAGHEKSRFGFVHFAEKSSARKALEGTEKYEIYGQVLECSLAKPQAAQRSSRTPVSQSSVALPTYPSQLGYGLVGGGYGSLGSRYGAAGFTRPLVYGRGAASSGMAMMPMLLPDGRIGYVLQQSGLQQHSRPPPSLGGRRGGSSIGGRRSNDRNRSRYHPY 477
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pral1284g00124 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 360 IPR000504 GO:0003723
Pral1284g00124 477 SMART rrm1_1 283 356 IPR000504 GO:0003723
Pral1284g00124 477 SMART rrm1_1 189 266 IPR000504 GO:0003723
Pral1284g00124 477 SMART rrm1_1 109 182 IPR000504 GO:0003723
Pral1284g00124 477 Coils Coil 44 76 - -
Pral1284g00124 477 MobiDBLite consensus disorder prediction 76 94 - -
Pral1284g00124 477 Gene3D - 6 188 IPR012677 -
Pral1284g00124 477 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 189 269 - -
Pral1284g00124 477 Gene3D - 189 267 IPR012677 -
Pral1284g00124 477 CDD RRM_SF 110 182 - -
Pral1284g00124 477 MobiDBLite consensus disorder prediction 15 32 - -
Pral1284g00124 477 SUPERFAMILY RNA-binding domain, RBD 189 274 IPR035979 GO:0003676
Pral1284g00124 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 270 IPR000504 GO:0003723
Pral1284g00124 477 MobiDBLite consensus disorder prediction 33 75 - -
Pral1284g00124 477 MobiDBLite consensus disorder prediction 441 477 - -
Pral1284g00124 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 180 IPR000504 GO:0003723
Pral1284g00124 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 353 IPR000504 GO:0003723
Pral1284g00124 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 257 IPR000504 GO:0003723
Pral1284g00124 477 SUPERFAMILY RNA-binding domain, RBD 106 362 IPR035979 GO:0003676
Pral1284g00124 477 Gene3D - 268 373 IPR012677 -
Pral1284g00124 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Pral1284g00124 477 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 16 420 - -
Pral1284g00124 477 MobiDBLite consensus disorder prediction 1 94 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pral1284g00124 Pral-Chr1284 658333 662785 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1284g00124 110 382 Eukaryotic Initiation Factors Gene Family AT4G34110 27.653 1.63e-16 80.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1284g00124 K13161 - qsa:O6P43_005954 546.199