Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral1284g00124 | ATGCCAGGGATGAGAAGCGGTGATGTTGAAGCCCAAAATCCAGAGTCACAAGAGAAGCAGGGTGACCTTGAAAAACCTACTGAGTCTGAAGAGAAGGTAGACTTTGATGGTGAAAATGATCAAGGCGATACCATGGAGGATGAAGTTGAATATGAAGAAGTAGAGGAGGAGGAGGAAGTGGAAGAGGAAGAGGAAGAGGAAGATGAAGAGGAGAGGGTGGAGGAAGAGACTGACGGGGCTGGCAATAGAAATGTTGCAGATACTGAGGATGAAGATGAGAAAAAGAAGCATGCAGAGCTTCTTGAACTTCCACCTCACGCGTCAGTGGTTTACATTGGTGGCATTCCTCACAATGCTTCTGAAGAGGATTTAAGGGACTTCTGTCAATCTGTGGGAGATGTATTTGAGGCTAAGATTATGAGGGGAAAAGAATCTGGGGAAGCGAAAGTTTATGCATTTGTGACCTTCAAGACAAAGGAGATGGCTTCTAACGCTATTGAGAAGCTGAACAAGTCTAAATTTCAGGGAAATGAAATAAAATGCTCAGCATCTAAAGAAAAACATAGGTTGTTTATTGGTAATATTCCTAAACACTGGACAGAGGAAGATTTGAGGAAGGCTATTACAGAAATTGGGCCTGGTGTCAATTCTGTTGAACTGATGAAGGAACCAAAGAATTCAGATCGTAATCGTGGATTTGCTTTTGTTGAGTATCACAATCATGAATGTGCAGAATATTCAAGGCAGAAGATGTCCAACTCAAAATTTAAACTCGACAGCAATGCTCCGACCGTGAAGTGGGCTGAACCTAAGAGTGCTGAATCGCCTGCAGCCTCCCAGGTAAAGGCCGTGTATGTAAAGAATCTGCCAGAAAGCATTACCCGGGATCGTCTTAAAGCGTTGTTTGAGCATCATGGAGAGATCACAAAAGTGGTACTCCCTCCTGCTAAAGCTGGCCATGAAAAGAGCAGATTTGGTTTTGTTCACTTCGCCGAGAAGTCATCAGCAAGGAAGGCGTTGGAGGGTACCGAGAAATATGAAATTTACGGCCAAGTTTTGGAGTGTTCACTTGCAAAACCACAAGCAGCTCAGAGGTCATCCAGGACACCGGTTTCACAGAGCTCAGTTGCACTGCCAACTTATCCATCTCAACTCGGTTATGGTTTGGTTGGAGGTGGCTATGGTTCTTTGGGTTCAAGATATGGTGCAGCTGGCTTTACACGACCGTTGGTCTATGGCAGGGGAGCGGCTTCTTCTGGTATGGCAATGATGCCTATGCTCTTACCTGATGGAAGGATTGGATATGTATTGCAACAGTCAGGATTGCAACAGCATTCCCGTCCACCGCCATCCCTTGGTGGCAGGAGAGGTGGCAGCTCCATTGGTGGGAGACGCAGTAATGACAGGAATCGGAGCCGATATCATCCCTACTAA | 1434 | 0.4568 | MPGMRSGDVEAQNPESQEKQGDLEKPTESEEKVDFDGENDQGDTMEDEVEYEEVEEEEEVEEEEEEEDEEERVEEETDGAGNRNVADTEDEDEKKKHAELLELPPHASVVYIGGIPHNASEEDLRDFCQSVGDVFEAKIMRGKESGEAKVYAFVTFKTKEMASNAIEKLNKSKFQGNEIKCSASKEKHRLFIGNIPKHWTEEDLRKAITEIGPGVNSVELMKEPKNSDRNRGFAFVEYHNHECAEYSRQKMSNSKFKLDSNAPTVKWAEPKSAESPAASQVKAVYVKNLPESITRDRLKALFEHHGEITKVVLPPAKAGHEKSRFGFVHFAEKSSARKALEGTEKYEIYGQVLECSLAKPQAAQRSSRTPVSQSSVALPTYPSQLGYGLVGGGYGSLGSRYGAAGFTRPLVYGRGAASSGMAMMPMLLPDGRIGYVLQQSGLQQHSRPPPSLGGRRGGSSIGGRRSNDRNRSRYHPY | 477 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral1284g00124 | 477 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 282 | 360 | IPR000504 | GO:0003723 | |
Pral1284g00124 | 477 | SMART | rrm1_1 | 283 | 356 | IPR000504 | GO:0003723 | |
Pral1284g00124 | 477 | SMART | rrm1_1 | 189 | 266 | IPR000504 | GO:0003723 | |
Pral1284g00124 | 477 | SMART | rrm1_1 | 109 | 182 | IPR000504 | GO:0003723 | |
Pral1284g00124 | 477 | Coils | Coil | 44 | 76 | - | - | |
Pral1284g00124 | 477 | MobiDBLite | consensus disorder prediction | 76 | 94 | - | - | |
Pral1284g00124 | 477 | Gene3D | - | 6 | 188 | IPR012677 | - | |
Pral1284g00124 | 477 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 189 | 269 | - | - | |
Pral1284g00124 | 477 | Gene3D | - | 189 | 267 | IPR012677 | - | |
Pral1284g00124 | 477 | CDD | RRM_SF | 110 | 182 | - | - | |
Pral1284g00124 | 477 | MobiDBLite | consensus disorder prediction | 15 | 32 | - | - | |
Pral1284g00124 | 477 | SUPERFAMILY | RNA-binding domain, RBD | 189 | 274 | IPR035979 | GO:0003676 | |
Pral1284g00124 | 477 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 188 | 270 | IPR000504 | GO:0003723 | |
Pral1284g00124 | 477 | MobiDBLite | consensus disorder prediction | 33 | 75 | - | - | |
Pral1284g00124 | 477 | MobiDBLite | consensus disorder prediction | 441 | 477 | - | - | |
Pral1284g00124 | 477 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 110 | 180 | IPR000504 | GO:0003723 | |
Pral1284g00124 | 477 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 284 | 353 | IPR000504 | GO:0003723 | |
Pral1284g00124 | 477 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 190 | 257 | IPR000504 | GO:0003723 | |
Pral1284g00124 | 477 | SUPERFAMILY | RNA-binding domain, RBD | 106 | 362 | IPR035979 | GO:0003676 | |
Pral1284g00124 | 477 | Gene3D | - | 268 | 373 | IPR012677 | - | |
Pral1284g00124 | 477 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 108 | 186 | IPR000504 | GO:0003723 | |
Pral1284g00124 | 477 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN | 16 | 420 | - | - | |
Pral1284g00124 | 477 | MobiDBLite | consensus disorder prediction | 1 | 94 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral1284g00124 | Pral-Chr1284 | 658333 | 662785 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral1284g00124 | 110 | 382 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 27.653 | 1.63e-16 | 80.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral1284g00124 | K13161 | - | qsa:O6P43_005954 | 546.199 |