Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1284g00104 ATGTCCATAAATCACCACTCATCGGACATTCCAGAGGCCACGCTGTGGTGGACCGAACAACATCGCCATCATCATCAAGGCTTTCTTATGCAGCCCTTACAAAACCCCTCTCCTTCGGCCTGGCCTTCCTATCTCTACCATCCTCCACCTCCCACCCGCTTCAACCTCAATAACAACGATGACGACGACGACGAAGACGACGATGAAGACAGTATTCAACACCAGCGGACTGGTCTCGTGGGAAACGATACGCCCACGTCCCAAGGAGGCTCAGGAGGCGAAGACGAGAAGGAAGGGATGTTCGAGAAGCCATTGACGCCGAGTGACGTGGGGAAGCTGAACCGGCTGGTGATTCCGAAGCAGCACGCGGAGAAGTACTTCCCGTTGGGGGCGGGAGGGGAGGCGGCCGGAGAGAGCAGGGGTGTGTCGCTGAGTTTCGAGGACGAGGCAGGAAAGTGCTGGAGGTTCCGTTACTCGTACTGGAACAGCAGTCAGAGCTACGTGCTGACCAAAGGCTGGAGTCGTTACGTCAAGGACAAGCGTCTCGATGCTGGCGATGTCGTTTACTTCCAGCGCCACCGCACCGACTCCAACCGCCTCTTCATCAACTGGAGGCGCCGCCACCAGTCTGGGTCCACCCCCGCGCATGTTAGCAGAGCGGTGCTCGTTCACAATACACCTACCACCACCACTACTGACGCCAACGGCAATATCAATATCAATAATAACAATGTTGGCGTGGGTTGGACCAGAAGTTTCTATGCTCCACATCCTTATCCTCCGCATCATCATCAAACCTTGCCATACCAACCTGACTGTCTTCATGCAGGCGTAGGTTTGGAAGAAGCAGAGCAGAACAAAACGACATCACCGGCGGGAAACAACTCCAGCTCGAGGATACTGAGGCTGTTCGGTGTGAACATGGAATGTCAACCAGACGAATCCGGATCCTCCGGACCCGAATACTCGTACTTGTCATCGACGTCATCGCAGGGTCCAGCCATCCCACACCACCACTTCCATGGCCGTTACAATCATCATCAATCTGCTTCTTATTATTCCAATCACATGGTACGTCAACAACCACACTCCTAG 1095 0.5443 MSINHHSSDIPEATLWWTEQHRHHHQGFLMQPLQNPSPSAWPSYLYHPPPPTRFNLNNNDDDDDEDDDEDSIQHQRTGLVGNDTPTSQGGSGGEDEKEGMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGAGGEAAGESRGVSLSFEDEAGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVYFQRHRTDSNRLFINWRRRHQSGSTPAHVSRAVLVHNTPTTTTTDANGNININNNNVGVGWTRSFYAPHPYPPHHHQTLPYQPDCLHAGVGLEEAEQNKTTSPAGNNSSSRILRLFGVNMECQPDESGSSGPEYSYLSSTSSQGPAIPHHHFHGRYNHHQSASYYSNHMVRQQPHS 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1284g00104 364 SMART B3_2 101 208 IPR003340 GO:0003677
Pral1284g00104 364 MobiDBLite consensus disorder prediction 40 106 - -
Pral1284g00104 364 MobiDBLite consensus disorder prediction 75 91 - -
Pral1284g00104 364 CDD B3_DNA 100 198 IPR003340 GO:0003677
Pral1284g00104 364 Pfam B3 DNA binding domain 101 207 IPR003340 GO:0003677
Pral1284g00104 364 MobiDBLite consensus disorder prediction 309 342 - -
Pral1284g00104 364 SUPERFAMILY DNA-binding pseudobarrel domain 100 209 IPR015300 -
Pral1284g00104 364 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 35 319 IPR044800 GO:0003700
Pral1284g00104 364 MobiDBLite consensus disorder prediction 311 334 - -
Pral1284g00104 364 Gene3D - 95 217 IPR015300 -
Pral1284g00104 364 ProSiteProfiles B3 DNA-binding domain profile. 101 208 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1284g00104 Pral-Chr1284 523110 525027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1284g00104 94 314 RAV Transcription Factor Family AT5G06250 51.092 1.29e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral1284g00104 B3 3.2e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1284g00104 K09287 - gmx:100795470 320.087