Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1284g00088 ATGTCTGGAGGCGTTGGAGCTTCAAACCGTCAGGCATCGCCACCACCTGAGACTTCTCAGAATCGGCCGCCACTGAAGCGTCACCTGGTCTTCGCGTCGACTAAACCGCCATTTGTTCCTCCGGATGATTATCACAGCTTTTCGTCTCCCAACTCTAGAAGGGCTGCCGATCAAGAACATGAAGCTGTTGTTGTTCGATCTCCGTACATGAAGCGGAAGAGCACAGTGAATGACAGCAATGGAGAGTCCCAGGAATGGAGTAAGAGCCCAGCTACTAATGTAACGATTAGTCCCCTCAAAACACCTGTGTCTGCAAAAGGAGGAAGGACATACAATAAGTCCAAGGTTGCCAAAGAAGGCAAATCTGGTCCTCAGACCCCCATCTCAAATGCTGGTTCCCCTTCTCTAACTCCTGCTGGCAGCTGTCGCTATGACAGTTCCTTGGGTTTGTTGACTAAAAAGTTCATCAATTTGCTCAAGCATGCAGAGGATGGTGATCTTGACCTAAACAAAGCGGCTGAAACTTTGGAGGTGCAAAAGAGGAGGATATATGACATAACCAATGTTTTGGAAGGAATTGGCCTCATTGAGAAAAAGCTTAAAAACAGGATACATTGGAAGGGAATCAAATCTTCTACGTCTGGAGAGGTTGATGGTGATGTATCTATGCTAAAGGCAGACGTGGAGACACTGTCTTTGGAGGAGCAAAGATTAGATGATCAAATAAGGGGAATGCAGGAAAGGCTGAGAAATTTGAGTGAAGATGAAAAAAACCAGAAGTGGCTTTTTGTAACTGAAGAAGATATTAAGGGCCTACCCGGCTTGCAGAATGAAACTCTAATAGCAATTAAAGCCCCACATGGAACCACCTTGGAAGTCCCTGATCCTGAGGAAGCCGTTGACTATCCACAGAGGAGATACAGAATAATTCTTAGAAGTACAATGGGTCCCATTGATGTCTACCTTGTCAGTCAATTTGAGGAGAAATTTGAAGAGATGAATGGTGTTGAGCCCCCTGCAAGCCTCCCACTTGCTTCAAGTTCAGGGTCCAATGAACACCTAACGACAGAAATGACTCCTCTTGAACACAATGGAAAGGGTCTTGAATCTCAAACTCAACTGCCATCTCATACATGCTCTGATCTAAATGCTTCACCAGAGTTCGGTGGGGGCATGATGAAAATTGTTCCTTCTGACGTTGATAATGATGCAGATTACTGGCTACTATCAGATGCTGACGTTAGCATTACAGATATGTGGAGAACAGATTCCAGTGTTGATTGGAATGGGGTAGACATGCTTCCCTCTGATTTTGGAATCGCCTCAAGACCACAAACTCCATCATCCGGGTTTGCTGATGGACCATCCACATTAGCTAACAATACTCAGAGGTGA 1395 0.4538 MSGGVGASNRQASPPPETSQNRPPLKRHLVFASTKPPFVPPDDYHSFSSPNSRRAADQEHEAVVVRSPYMKRKSTVNDSNGESQEWSKSPATNVTISPLKTPVSAKGGRTYNKSKVAKEGKSGPQTPISNAGSPSLTPAGSCRYDSSLGLLTKKFINLLKHAEDGDLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIKSSTSGEVDGDVSMLKADVETLSLEEQRLDDQIRGMQERLRNLSEDEKNQKWLFVTEEDIKGLPGLQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLVSQFEEKFEEMNGVEPPASLPLASSSGSNEHLTTEMTPLEHNGKGLESQTQLPSHTCSDLNASPEFGGGMMKIVPSDVDNDADYWLLSDADVSITDMWRTDSSVDWNGVDMLPSDFGIASRPQTPSSGFADGPSTLANNTQR 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1284g00088 464 SMART E2F_TDP_2 143 208 IPR003316 GO:0005667|GO:0006355
Pral1284g00088 464 MobiDBLite consensus disorder prediction 72 100 - -
Pral1284g00088 464 FunFam E2F transcription factor 1 137 210 - -
Pral1284g00088 464 Pfam E2F transcription factor CC-MB domain 224 324 IPR032198 GO:0046983
Pral1284g00088 464 Gene3D - 137 210 IPR036388 -
Pral1284g00088 464 Pfam E2F/DP family winged-helix DNA-binding domain 145 208 IPR003316 GO:0005667|GO:0006355
Pral1284g00088 464 CDD E2F_DD 224 325 IPR032198 GO:0046983
Pral1284g00088 464 Gene3D - 215 325 - -
Pral1284g00088 464 PANTHER TRANSCRIPTION FACTOR E2F 80 425 IPR015633 GO:0000978|GO:0006357
Pral1284g00088 464 MobiDBLite consensus disorder prediction 439 464 - -
Pral1284g00088 464 MobiDBLite consensus disorder prediction 1 139 - -
Pral1284g00088 464 MobiDBLite consensus disorder prediction 1 16 - -
Pral1284g00088 464 SUPERFAMILY "Winged helix" DNA-binding domain 143 206 IPR036390 -
Pral1284g00088 464 Coils Coil 228 255 - -
Pral1284g00088 464 MobiDBLite consensus disorder prediction 441 464 - -
Pral1284g00088 464 MobiDBLite consensus disorder prediction 123 139 - -
Pral1284g00088 464 SUPERFAMILY E2F-DP heterodimerization region 221 325 IPR037241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1284g00088 Pral-Chr1284 424381 429188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1284g00088 23 464 E2F-DP Transcription Factor Family AT2G36010 60.345 3.64e-173 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pral1284g00088 E2F_CC-MB 1.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1284g00088 K06620 - qsa:O6P43_009644 693.73