Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1284g00066 ATGGATCACGAGATTGATGTCCCTCCCTTCTTTATCTGCCCCGTTTCATTGGAAATCATGAAGGATCCGGTGACCGTGTCCACCGGTATTACCTACGACCGCGAGAGTATTGAGAAATGGCTGTTCTCCGGGAAGAACATGACCTGCCCAGTCACCAAACAACCCCTATCAGACGACACAGGTCTCACCCCCAACCATACCCTTCGCCGATTGATTCAGGCCTGGTGTACCATGAACGCTTCTCACGGCATCGAAAGGATCCCCACGCCCAAGCCCCCAGTCACCAAGACCCAGATTTCCAAGCTCATCAGAGACGCTTCCCGATCACCTCACTCCCTGACTCGCTGTCTCCGAGAACTCAAATCTATTGCTTCCGACAGCGAAACAAACAGACGCTGCATGGAAGCTTCGGGTGCTGTTGAGTTCTTGGCATCCATTATATCCACAACCTCACCCCAGGCGGAGCCTAACCAAGACGAGGCCTTAGGTATCCTCCACAACCTCCACGTCTCGGAAGCTAGCCTAAAATCTCTCATAACCTTCAGAAATGGAGGGCTAATAGATTCCTTAACCACGGTCATGCAGAAAGGAGTCTACGAGTCACGAGCCTATGCAGTCCTTTTACTGAATTCAATGTTCCAAGTCGCTGATTCTTCACGCCTGTTCAACATAAGATATGAGCTATTCGTTGAATTAGTGCAAATTCTCAAAGATCAAATCTCCCAGCAGGCTACATACGCGACGCTGCAAACACTGATCCAGCTCTGCCCGTGGGGAAGAAACAGGCACAGAGCAGTAAAAGCAGGGTGTGTTTGGGAACTGATAGAACTGCTTCTGGATTGTGAGGAGAGGAAGATGTGTGAGATGACGCTAGTGGTGTTGGATATGCTGTGTAGTTGTGCTGAGGGAAGAGCAGAGCTGTTGAGGCACGGGGCAGGGCTAGCCGTCGTGTCGAAGAAGATTCTGAGGGTTTCGACTACGGCGAACGAGAGGGCGGTGAGGATTCTGCTGTCTGTTTCCAAGTCCTCGGGGACTGCCAGTGTTGTGCAGGAAATGATACAAGTGGGTGCGATGGGGAAGCTGTGTTCGGTGATGCAAATGGAGAGTGGGAGCAAGACGAAGGAGAAAGCTAGAGAGATTCTCAAACTCCATGCTCTCGCATGCAAGAACTCTGCATGCATGCCCGGCAGTTTGGGTTCATACTTAGCTTGA 1212 0.5116 MDHEIDVPPFFICPVSLEIMKDPVTVSTGITYDRESIEKWLFSGKNMTCPVTKQPLSDDTGLTPNHTLRRLIQAWCTMNASHGIERIPTPKPPVTKTQISKLIRDASRSPHSLTRCLRELKSIASDSETNRRCMEASGAVEFLASIISTTSPQAEPNQDEALGILHNLHVSEASLKSLITFRNGGLIDSLTTVMQKGVYESRAYAVLLLNSMFQVADSSRLFNIRYELFVELVQILKDQISQQATYATLQTLIQLCPWGRNRHRAVKAGCVWELIELLLDCEERKMCEMTLVVLDMLCSCAEGRAELLRHGAGLAVVSKKILRVSTTANERAVRILLSVSKSSGTASVVQEMIQVGAMGKLCSVMQMESGSKTKEKAREILKLHALACKNSACMPGSLGSYLA 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1284g00066 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Pral1284g00066 403 CDD RING-Ubox_PUB 8 60 IPR045210 -
Pral1284g00066 403 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Pral1284g00066 403 PANTHER WDSAM1 PROTEIN 3 395 IPR045185 GO:0061630
Pral1284g00066 403 SUPERFAMILY ARM repeat 107 382 IPR016024 -
Pral1284g00066 403 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Pral1284g00066 403 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Pral1284g00066 403 Gene3D - 92 394 IPR011989 -
Pral1284g00066 403 SUPERFAMILY RING/U-box 4 83 - -
Pral1284g00066 403 FunFam RING-type E3 ubiquitin transferase 1 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1284g00066 Pral-Chr1284 288768 290024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1284g00066 1 398 U-box Gene Family AT2G35930 55.970 6.71e-166 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1284g00066 - - gmx:100809839 543.888