Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1284g00060 ATGAATGACTTGTTCTCCGGCTCCTTCTCTCGCCTCCGCCACGAGCAGGCATCGCCGGATCATCATGTCATCGAGATGGCGTCCACGACGCCCACCGGCGGTGTCAACCTTGACAAGTTCTTCGATAACGTGGAGTCGATCAAGGACGAACTCAAGGAGCTGGATCGCCTCAACCGGAACCTCCAGAGCTCTCACGAGCAGAGCAAGACCCTCCACAACGCAAAGGCCGTCAAGGACCTCCGTTCTCGCATGGACGGCGATGTTGCGCTTGCTCTCAAGAAGGCGAAGCTCATCAAGGTCAAGCTGGAGGCTCTGGATCGATCCAACGCGGCCAACCGTAGCTTGCCGGGTTGCGGGCCAGGATCCTCGTCGGACCGCACCCGCACCTCGGTGGTCAACGGGTTGAAAAAGAAGCTGAAGGACTCCATGGAGAGCTTCAATAGCCTTAGGCAGCAGATCTCATCGGAATACCGCGAGACTGTACAACGCAGGTATTTCACGGTCACCGGCGAGAACCCTGATGAGAAGACCGTCGACCTCTTGATCTCTACAGGTGAGAGCGAGACGTTCCTTCAGAAGGCCATCCAAGAACAGGGCAGAGGCAGGATTCTGGATACTATCAATGAGATTCAAGAGAGGCATGATGCTGTGAAAGAGATAGAGAAGAATCTGAAGGAGTTGCATCAAGTGTTCCTTGACATGGCAGTGCTGGTGGAATCTCAAGGGGAGCAATTGAATGACATAGAAAGCCACGTGGCGAGAGCTCAGTCGTTTGTGAGGGGCGGAGCTGAGCAGTTGCAGACTGCAAGGAAGCACCAGAAAAACACCAGGAAATGGACCTGTTATGCTATCACGATTCTCCTAGTAATCATCTTGTTTGTGGTTCTCTTCACTGTTAGACCATGGGAACATAACAAAGGCGGCGGCGGCAATCAGCAAGCTTCACCCCAAACACCTCCTCCGCCCCCCGCTACGCCTGCTGGAAGATGA 990 0.5434 MNDLFSGSFSRLRHEQASPDHHVIEMASTTPTGGVNLDKFFDNVESIKDELKELDRLNRNLQSSHEQSKTLHNAKAVKDLRSRMDGDVALALKKAKLIKVKLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLKKKLKDSMESFNSLRQQISSEYRETVQRRYFTVTGENPDEKTVDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKEIEKNLKELHQVFLDMAVLVESQGEQLNDIESHVARAQSFVRGGAEQLQTARKHQKNTRKWTCYAITILLVIILFVVLFTVRPWEHNKGGGGNQQASPQTPPPPPATPAGR 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1284g00060 329 Coils Coil 37 67 - -
Pral1284g00060 329 MobiDBLite consensus disorder prediction 315 329 - -
Pral1284g00060 329 FunFam Syntaxin 132 200 300 - -
Pral1284g00060 329 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
Pral1284g00060 329 MobiDBLite consensus disorder prediction 306 329 - -
Pral1284g00060 329 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 34 164 - -
Pral1284g00060 329 Pfam Syntaxin 39 242 IPR006011 GO:0016020
Pral1284g00060 329 CDD SNARE_syntaxin1-like 206 268 - -
Pral1284g00060 329 Coils Coil 132 152 - -
Pral1284g00060 329 Gene3D - 204 300 - -
Pral1284g00060 329 Coils Coil 207 227 - -
Pral1284g00060 329 SMART SynN_4 32 158 IPR006011 GO:0016020
Pral1284g00060 329 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pral1284g00060 329 CDD SynN 37 194 IPR006011 GO:0016020
Pral1284g00060 329 Gene3D - 35 167 - -
Pral1284g00060 329 SMART tSNARE_6 202 269 IPR000727 -
Pral1284g00060 329 PANTHER SYNTAXIN 54 291 IPR045242 -
Pral1284g00060 329 SUPERFAMILY t-snare proteins 35 262 IPR010989 GO:0016020|GO:0016192
Pral1284g00060 329 Pfam SNARE domain 243 295 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1284g00060 Pral-Chr1284 250092 252081 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1284g00060 32 323 SNARE and Associated Proteins AT3G11820 77.076 3.10e-160 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1284g00060 K08486 - rcu:8259763 520.005