Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1284g00059 ATGAACGACTTGCTCAGCTCCTCCTTTTCCCCCTCCGCCGAGGACAACCACCACCATGTCATCCAGATGACGGAGCTGACTGACGGTGCCAACCTCGACAAGTTCTTCGAGGAAGTGGATTCCCTCAAGAAGGAGCTCAACGAGCTGGAGCGCCTCAACCAATCCCTCCGAAGCTCCCATGAACAGAGCAAGACTCTTCACAACGCTAAGGCCGTCAAGGACCTCCGCTCTCGCATGGACTCTGACGTCACCCTCGCCCTCAAGAAAGCCAAGCTCGTCAAGCTCCGCCTCGAGGCACTCGACCGCTCCAACGAACAGAACCGCAGCTTGCCCGGCTGTGGACCCGGCTCCTCTTCCGACCGGACTCGAACTTCAGTGGTCAACGGCCTGAGAAAGAAGCTCAAAGACTCCATGGAGAGCTTCAACAACCTCAGGCAACAAATTTCCACCGAGTACAGAGACACCGTACGGCGTAGGTACTACACGGTCACCGGCGAGAATCCCGACGACAAAACCGTCGACCTCCTTGTCTCTACCGGGGAGAGTGAAAATTTCCTGCAGAAAGCGATTCAACAGCAAGGGAGAGCGAGCGTGTTGGACACGATCCATGAGATTCAAGAGAGGCACGACGCGGTGAAAGAGATAGAGAGGAATCTGAATGAGCTGCACCAGGTGTTCTTGGACATGGCAGTGCTGGTCCAGGCGCAGGGGGAGCAGTTGGATGATATAGAGAGCCACGTGGCAAGAGCCGATTCGTATGTGAGAGGAGGGGCGCAGCAGTTGCATGTTGCGAGGAAGCACCAGAAGAACACGCGGAAATGGACTTGCATAGCCATCATACTGCTCATCATTATTATATTGATTATAGTTCTCCCCATTGTGTTGAGAAAATGA 894 0.5447 MNDLLSSSFSPSAEDNHHHVIQMTELTDGANLDKFFEEVDSLKKELNELERLNQSLRSSHEQSKTLHNAKAVKDLRSRMDSDVTLALKKAKLVKLRLEALDRSNEQNRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNNLRQQISTEYRDTVRRRYYTVTGENPDDKTVDLLVSTGESENFLQKAIQQQGRASVLDTIHEIQERHDAVKEIERNLNELHQVFLDMAVLVQAQGEQLDDIESHVARADSYVRGGAQQLHVARKHQKNTRKWTCIAIILLIIIILIIVLPIVLRK 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1284g00059 297 Pfam SNARE domain 238 290 IPR000727 -
Pral1284g00059 297 SUPERFAMILY t-snare proteins 30 257 IPR010989 GO:0016020|GO:0016192
Pral1284g00059 297 Coils Coil 32 66 - -
Pral1284g00059 297 Gene3D - 29 162 - -
Pral1284g00059 297 MobiDBLite consensus disorder prediction 105 124 - -
Pral1284g00059 297 CDD SynN 32 189 IPR006011 GO:0016020
Pral1284g00059 297 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 202 264 IPR000727 -
Pral1284g00059 297 Pfam Syntaxin 34 237 IPR006011 GO:0016020
Pral1284g00059 297 SMART SynN_4 27 153 IPR006011 GO:0016020
Pral1284g00059 297 Coils Coil 127 147 - -
Pral1284g00059 297 ProSitePatterns Syntaxin / epimorphin family signature. 208 247 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pral1284g00059 297 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 29 159 - -
Pral1284g00059 297 FunFam Syntaxin 132 195 295 - -
Pral1284g00059 297 CDD SNARE_syntaxin1-like 201 261 - -
Pral1284g00059 297 Gene3D - 190 295 - -
Pral1284g00059 297 PANTHER SYNTAXIN 49 286 IPR045242 -
Pral1284g00059 297 SMART tSNARE_6 197 264 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1284g00059 Pral-Chr1284 245684 247209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1284g00059 27 276 SNARE and Associated Proteins AT3G11820 76.400 5.34e-144 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1284g00059 K08486 - qsa:O6P43_006031 422.55