Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1284g00056 ATGAGCAACAACGGCACAGATAATTCCTCTGGATTCCTAGGATCCAACAACATCAGTGGATTCGGGTATGGCATAGGAATATCAAGTGGGATTCTTCTGCTTGTCACCACCATCACCCTCACTTCCTATTTCTGCACCAGAACACAGTCACCACCGTCTTCTCCCTCCCCCTTGGCTGCTCGGAGAAATCTCCCCACTTTCTTTGAGCCGCATCACACGGTGGTGGATGTGGGGATAGACGAAGCCACCATTCTGAGCTACCCCAAGCTTCTGTATTCTGAGGCCAAGCTACAAAAGCCAGATTCCACGGGGACATGCTGCTCCATATGCCTAGGAGATTATAAAAGCAGGGATATGCTTCGGGAGTTGCCGGATTGTGGTCATATATTCCACCTTAAGTGCATTGATCCATGGCTCAGAATGCATCCAACGTGTCCTCTCTGTAGAACATCTCCTGTCCCAACACCACTCGCCACGCCTCTCGCCGAGGTGGCTCCATTGACCACCATGCGGGTACCATAA 522 0.5115 MSNNGTDNSSGFLGSNNISGFGYGIGISSGILLLVTTITLTSYFCTRTQSPPSSPSPLAARRNLPTFFEPHHTVVDVGIDEATILSYPKLLYSEAKLQKPDSTGTCCSICLGDYKSRDMLRELPDCGHIFHLKCIDPWLRMHPTCPLCRTSPVPTPLATPLAEVAPLTTMRVP 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1284g00056 173 CDD RING-H2_EL5-like 106 149 - -
Pral1284g00056 173 SUPERFAMILY RING/U-box 92 154 - -
Pral1284g00056 173 SMART ring_2 107 148 IPR001841 -
Pral1284g00056 173 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 163 IPR045899 -
Pral1284g00056 173 Pfam Ring finger domain 107 149 IPR001841 -
Pral1284g00056 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 154 IPR013083 -
Pral1284g00056 173 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1284g00056 Pral-Chr1284 229501 230391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1284g00056 10 169 C3H Transcription Factor Family AT2G35910 58.642 1.45e-53 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1284g00056 - - qsa:O6P43_009684 231.491