Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1284g00049 ATGCATCACTTGGCAGGCTGTCCTGATGTGATATCCATAAAAGGAGCTTATGAGGATGCCCTGGCTGTTCATGTTGTGATGGAGCTATGTGCAGGTGGTGAGTTGTTTGACAGGATTGTACAGAGAGGGCATTACACTGAGAGAAAAGCAGCTCAAATAGCCAGGACTGTAGTTGGTGTCATTGAAGCTTGTCACTCACTGGGAGTAATGCATCGCGATCTTAAGCCCGAAAATTTTCTCTTCACTAATGATCAGGAGGATTCTCCCCTTAAGGCTATCGATTTTGGCTTGTCTGCTTTCTTCAAACCAGGGGATATATTTAATGACGTGGTGGGTAGCCCATACTACGTTGCACCAGAAGTCCTAAAGAAGCGTTATGGTCCAGAAGCTGATGTGTGGAGTGCTGGTGTAATCATATTCATTCTGTTAAGTGGGGTGCCTCCGTTTTGGGCTGAAACGGAGAAAGAGATATTTAGCGAAGTATTGCACGGTGAACTTGATTTCAAGTCAGATCCCTGGCCTAAGATTTCTGAGAGTGCAAAGGACTTGGTCAGGAAGATGCTCGATAGAGATCCTAGCAAGAGATTAACAGCCCACGAAGTTCTCTGTCATCCTTGGATTCGAGTTGATGGAGCAGCTCCTGATAAGCCTCTTGACCCTGCAGTTCTGACTCGCCTGAAGCAGTTTTCTGCAATGAACAAGCTCAAAAAAATGGCTCTTAGAATTATTGCCCAGAACCTATCCGAGGAAGAAATTGCAGGGTTGAAAGAAATGTTTAAAATGATAGATACAGACAATAGTGGTCAAATTACTTTTGAAGAACTCAAGGCTGGATTGAAAGCCTTCGGAGCTAACATCGATGAATCTGAGATTCACAATCTAATGCAAGCGGTAAGTAACTGGAAAAATCTTGCCTTGAAACAAAAAACACCATATCGTCAAATAATATTACAGGCAGACGTTGACAATAGTGGCACAATAGACTACGCAGAATTCATAGCAGCAACCTTGAATCTCAACAAAGCTGAGAAAGAAGACAACTTAGTCGCTGCCTTCCGTTATTTTGACAAAGACGGAAGTGGCTACATCACCCAAGACGAGCTTCAACAAGTTTGTGAAGAAATTGGTCTGGAGAATGTTCGCTGGGAGGAGATCATGCGTGAGGCTGATCAAGATAATGATGGCCGAATAGACTACAATGAATTTGTGGCAATGATGCAGATAGACAATGCAGATATGGTAAAGAAGGGCATAAGGCGGAAATAA 1266 0.4329 MHHLAGCPDVISIKGAYEDALAVHVVMELCAGGELFDRIVQRGHYTERKAAQIARTVVGVIEACHSLGVMHRDLKPENFLFTNDQEDSPLKAIDFGLSAFFKPGDIFNDVVGSPYYVAPEVLKKRYGPEADVWSAGVIIFILLSGVPPFWAETEKEIFSEVLHGELDFKSDPWPKISESAKDLVRKMLDRDPSKRLTAHEVLCHPWIRVDGAAPDKPLDPAVLTRLKQFSAMNKLKKMALRIIAQNLSEEEIAGLKEMFKMIDTDNSGQITFEELKAGLKAFGANIDESEIHNLMQAVSNWKNLALKQKTPYRQIILQADVDNSGTIDYAEFIAATLNLNKAEKEDNLVAAFRYFDKDGSGYITQDELQQVCEEIGLENVRWEEIMREADQDNDGRIDYNEFVAMMQIDNADMVKKGIRRK 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1284g00049 421 FunFam Calcium-dependent protein kinase SK5 35 219 - -
Pral1284g00049 421 CDD STKc_CAMK 1 206 - -
Pral1284g00049 421 Pfam EF-hand domain pair 348 407 IPR002048 GO:0005509
Pral1284g00049 421 Gene3D - 214 410 - -
Pral1284g00049 421 SUPERFAMILY Protein kinase-like (PK-like) 1 228 IPR011009 -
Pral1284g00049 421 ProSiteProfiles EF-hand calcium-binding domain profile. 381 412 IPR002048 GO:0005509
Pral1284g00049 421 ProSitePatterns EF-hand calcium-binding domain. 320 332 IPR018247 -
Pral1284g00049 421 Gene3D Transferase(Phosphotransferase) domain 1 35 213 - -
Pral1284g00049 421 Gene3D Phosphorylase Kinase; domain 1 1 34 - -
Pral1284g00049 421 ProSiteProfiles EF-hand calcium-binding domain profile. 343 378 IPR002048 GO:0005509
Pral1284g00049 421 FunFam Calcium-dependent protein kinase 1 215 410 - -
Pral1284g00049 421 ProSiteProfiles EF-hand calcium-binding domain profile. 307 342 IPR002048 GO:0005509
Pral1284g00049 421 SUPERFAMILY EF-hand 246 409 IPR011992 -
Pral1284g00049 421 Pfam EF hand 318 332 IPR002048 GO:0005509
Pral1284g00049 421 Pfam Protein kinase domain 3 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1284g00049 421 CDD EFh 255 335 IPR002048 GO:0005509
Pral1284g00049 421 ProSiteProfiles EF-hand calcium-binding domain profile. 250 285 IPR002048 GO:0005509
Pral1284g00049 421 ProSitePatterns EF-hand calcium-binding domain. 356 368 IPR018247 -
Pral1284g00049 421 Pfam EF hand 255 281 IPR002048 GO:0005509
Pral1284g00049 421 CDD EFh 348 407 IPR002048 GO:0005509
Pral1284g00049 421 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 402 - -
Pral1284g00049 421 ProSitePatterns EF-hand calcium-binding domain. 390 402 IPR018247 -
Pral1284g00049 421 ProSitePatterns EF-hand calcium-binding domain. 263 275 IPR018247 -
Pral1284g00049 421 ProSiteProfiles Protein kinase domain profile. 1 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1284g00049 421 SMART serkin_6 1 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1284g00049 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 69 81 IPR008271 GO:0004672|GO:0006468
Pral1284g00049 421 SMART efh_1 347 375 IPR002048 GO:0005509
Pral1284g00049 421 SMART efh_1 381 409 IPR002048 GO:0005509
Pral1284g00049 421 SMART efh_1 311 339 IPR002048 GO:0005509
Pral1284g00049 421 SMART efh_1 254 282 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1284g00049 Pral-Chr1284 197293 199710 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1284g00049 1 407 EF-hand Containing Proteins AT5G04870 77.641 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pral1284g00049 Pkinase 6.9e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1284g00049 K13412 - rcu:8259786 672.544