Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1284g00033 ATGCGTAGCTTCAAGAGCTTCATGTCCAGTACAAGAAGGATCAAGAAGAAGAACAGAAACAGGTGCAAACTCAAAAGCCAATCCGCTTTCCATAAGCAAAATTGCATTTCCCATAACAATGAATTGCTAGACCGAGACGAAGCGATAGAAGATACTGAAGGTTTCAGGCTCAAAACCTATGCTCCATCACACACTTATTGGGTTCAACCCTTGGGCAATCTTTATCTCAACCCAGGTTCTATCAACTGCAGAGATACAGGTTTAGGTAATCTGCACGCTCTGACAGATGAGCTTGTTCTTGAAATTCTGGGGTTGTTAAGTGGGAACGACTTGGGGGTTTTAGCAACTGTTAGTAAGTCTTTTTATGTTTTCACCAGTCATGAACCCCTTTGGAGGAATCTTGTATTGGAAAATCTTAGTGGTGGCTTCCGGTACAATGGATCTTGGAAGTCTACTTATATTGGTGCTTACTACCCTTCATTTGATGCATCAAATAGTGCCATTCAGAATTTCAAAGTGAGAGACTTCTATTCTGATTATCTTTTTCAAAGTTGGCTCTGTGCTAACCTTGAAATGAAACCAGAATGGCTGGTAAGAGATAATATAGTTCGAAAAAGGGGCATTTCGGTTGAAGAATTCGTCAAGAATTTTGAGGAGCCTAATAGGCCGGTATTGTTGGAAGGATGTCTTGATAACTGGGATGCACTGAAAAAATGGGATAGAGATTATTTGGTGCAGTTGTGTGGTGATGTTAAGTTTTCAGTTGGGCCAGTAGAGATGAGGCTTGAAGACTATTTTGAATATTCGGATCACGTGAGAGAAGAAAGACCATTGTACCTGTTTGATCCAAAGTTTGCTGAAAAAGTTCCAAATTTGGATTCCCAATTTGACGTTCCGGCTTACTTCCAGGAGGACTTGTTTAGTGTCTTGGGCAGAGAGAGACCAGACTACAGGTGGATTATTGTTGGGCCAGCTGGATCAGGATCATCTTTCCACGTTGATCCAAATTCAACTTCGGCTTGGAATGCTGTGATCAAGGGCTCCAAGAAGTGGATACTATTTCCTCCTGATGTGATTCCACCTGGAGTTCTTCCTAGCCCTGATGGTGCAGAGGTTGCATCTCCTGTTTCAATAATTGAGTGGTTCATGAACTTTTATGGCGCGACAAAAAGTTGGAAAAAGAAACCTATTGAATGCGTCTGTAAAGCGGGGGAGGTTGTCTTTGTGCCTAATGGATGGTGGCATTTGGTGATCAATTTGGAGGAGTCCATAGCTATAACGCAAAATTTTGTCAGTAGGGGAAACTTGCTTAATGTCTTGGATTTTCTCAAAAGGCCGAATGCGAGCGTGCTAGTATCTGGAACAAGAGATCGAGTGAATTTGTATGATAAGTTCAGAAATGCTATCGAGGATTCTTTTCCTGGAATAATTGATGAGCTGACCCGGAAAGAGGAACAGAAACAGATTCAGCAGAAGAAACTTTCCTTCTGGGATTCTGTCACTGATTCTAAAGTGGGAGCTTTTAAGTTCTCTTTCTAG 1539 0.4172 MRSFKSFMSSTRRIKKKNRNRCKLKSQSAFHKQNCISHNNELLDRDEAIEDTEGFRLKTYAPSHTYWVQPLGNLYLNPGSINCRDTGLGNLHALTDELVLEILGLLSGNDLGVLATVSKSFYVFTSHEPLWRNLVLENLSGGFRYNGSWKSTYIGAYYPSFDASNSAIQNFKVRDFYSDYLFQSWLCANLEMKPEWLVRDNIVRKRGISVEEFVKNFEEPNRPVLLEGCLDNWDALKKWDRDYLVQLCGDVKFSVGPVEMRLEDYFEYSDHVREERPLYLFDPKFAEKVPNLDSQFDVPAYFQEDLFSVLGRERPDYRWIIVGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVLPSPDGAEVASPVSIIEWFMNFYGATKSWKKKPIECVCKAGEVVFVPNGWWHLVINLEESIAITQNFVSRGNLLNVLDFLKRPNASVLVSGTRDRVNLYDKFRNAIEDSFPGIIDELTRKEEQKQIQQKKLSFWDSVTDSKVGAFKFSF 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1284g00033 512 SUPERFAMILY Clavaminate synthase-like 202 445 - -
Pral1284g00033 512 SMART fbox_2 94 134 IPR001810 GO:0005515
Pral1284g00033 512 ProSiteProfiles JmjC domain profile. 287 447 IPR003347 -
Pral1284g00033 512 Pfam Cupin-like domain 211 430 IPR041667 -
Pral1284g00033 512 SMART cupin_9 285 447 IPR003347 -
Pral1284g00033 512 SUPERFAMILY F-box domain 87 155 IPR036047 GO:0005515
Pral1284g00033 512 Gene3D Cupin 175 432 - -
Pral1284g00033 512 Gene3D - 86 160 - -
Pral1284g00033 512 ProSiteProfiles F-box domain profile. 88 134 IPR001810 GO:0005515
Pral1284g00033 512 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 88 510 - -
Pral1284g00033 512 FunFam F-box protein At1g78280 182 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1284g00033 Pral-Chr1284 135761 138144 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1284g00033 79 436 Glycosyltransferase AT1G78280 38.587 3.37e-77 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pral1284g00033 Cupin_8 1.8e-24 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1284g00033 - - qsa:O6P43_009409 834.328