Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1284g00014 ATGTCGCTTGTAATCTATGACGACTATGTGCCGTTCGGAGTTTGTGTGAACAGGATGGAGTCTCAGGCGAAGCATGCTGTGGTTGTTAAAGTGATGGGACGCACTGGCTCCAGAGGGCAAGTGACTCAAGTTAGAGTCAAGTTTTTGGATGATCATAACCGTTATATTATGAGGAATGTGAAAGGACCTGTGAGAGAAGGAGACATTCTTACCTTACTTGAGTCTGAAAGGGAAGCTAGAAGACTTCGCTAG 252 0.4524 MSLVIYDDYVPFGVCVNRMESQAKHAVVVKVMGRTGSRGQVTQVRVKFLDDHNRYIMRNVKGPVREGDILTLLESEREARRLR 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1284g00014 83 Pfam Ribosomal protein S28e 22 82 IPR000289 GO:0003735|GO:0005840|GO:0006412
Pral1284g00014 83 FunFam 40S ribosomal protein S28 16 83 - -
Pral1284g00014 83 Coils Coil 72 83 - -
Pral1284g00014 83 Hamap 30S ribosomal protein S28e [rps28e]. 19 83 IPR000289 GO:0003735|GO:0005840|GO:0006412
Pral1284g00014 83 ProSitePatterns Ribosomal protein S28e signature. 74 82 IPR028626 -
Pral1284g00014 83 SUPERFAMILY Nucleic acid-binding proteins 19 83 IPR012340 -
Pral1284g00014 83 PANTHER 40S RIBOSOMAL PROTEIN S28 19 83 IPR000289 GO:0003735|GO:0005840|GO:0006412
Pral1284g00014 83 CDD S1_S28E 24 83 IPR000289 GO:0003735|GO:0005840|GO:0006412
Pral1284g00014 83 Gene3D - 16 83 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1284g00014 Pral-Chr1284 84937 86069 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1284g00014 19 83 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 90.769 7.95e-36 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1284g00014 K02979 - csv:101212501 99.7525