LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral1283g00198	ATGGCGAAAATGACGTCGTTGTTGCTCTGGACGCTGGTCCTCTTCAGCACTCTCGCTCTCATCCAGGCCAAGAAGTCGAAGGAGGATTTGAAAGAAGTGACACACAAGGTTTATTTCGACGTCGAAATTGATGGAAAGCCTGCCGGTCGTGTTGTAATCGGTCTTTATGGGAAGACAGTTCCAAAAACTGCAGAAAACTTTCGAGCTCTTTGCACAGGGAGAAAGGAACTGGAAAATTGGAAACCTCTCCATTACAAGGGCAGCACATTCCACAGGATTATTCCTAGCTTCATGATCCAAGGAGGTGATTTTACCCACGGCAATGGAATGGGCGGTGAGTCAATCTATGGAGAGAAGTTTGCTGATGAGAACTTCAAGCTGCACACCGGACCAGGACTTCTATCAATGGCAAACGCTGGTCCTGATACCAATGGTTCGCAATTCTTCATCACAACGGTGACAACTAGCTGGTTGGATGGAAGGCACGTCGTGTTTGGAAAAGTGATTTCTGGAATGGATGTGGTTTACAAGATCGAGGCTGAAGGAAGGCAAAGTGGCACTCCCAAGAGCAAGGTCGTAATTGCTGATAGCGGTGAACTCCCATTATAA	609	0.4713	MAKMTSLLLWTLVLFSTLALIQAKKSKEDLKEVTHKVYFDVEIDGKPAGRVVIGLYGKTVPKTAENFRALCTGRKELENWKPLHYKGSTFHRIIPSFMIQGGDFTHGNGMGGESIYGEKFADENFKLHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVISGMDVVYKIEAEGRQSGTPKSKVVIADSGELPL	202

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral1283g00198	202	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	39	197	IPR002130	GO:0000413\|GO:0003755
	Pral1283g00198	202	SUPERFAMILY	Cyclophilin-like	33	200	IPR029000	-
	Pral1283g00198	202	Gene3D	-	22	201	IPR029000	-
	Pral1283g00198	202	ProSitePatterns	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	85	102	IPR020892	GO:0003755\|GO:0006457
	Pral1283g00198	202	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	147	159	IPR002130	GO:0000413\|GO:0003755
	Pral1283g00198	202	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	90	102	IPR002130	GO:0000413\|GO:0003755
	Pral1283g00198	202	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	55	70	IPR002130	GO:0000413\|GO:0003755
	Pral1283g00198	202	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	160	175	IPR002130	GO:0000413\|GO:0003755
	Pral1283g00198	202	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	132	147	IPR002130	GO:0000413\|GO:0003755
	Pral1283g00198	202	PIRSF	Peptidylpro_ismrse	17	201	IPR024936	GO:0003755
	Pral1283g00198	202	FunFam	Peptidyl-prolyl cis-trans isomerase	30	201	-	-
	Pral1283g00198	202	CDD	cyclophilin_ABH_like	35	198	-	-
	Pral1283g00198	202	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	38	199	IPR002130	GO:0000413\|GO:0003755
	Pral1283g00198	202	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	36	200	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral1283g00198	Pral-Chr1283	1140576	1143363	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral1283g00198	49	179	U-box Gene Family	AT5G67530	45.865	2.22e-27	106

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral1283g00198	K01802		-	gmx:100305485	352.443