Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1283g00191 ATGTGCAGCGGTTCCAAGAGGAAACCCTCTCAAGCAGGTTTCGTTATGGAGGATGAATATGGGAAAGAAGAGGGGCTGCATCACAATACTTATGTCTTGCTTGAACTTGCAGCCTCAGATGATGTTGCGAGTTTCAAAGATGCAGTTGAGCAAGAGGGTCTTGATGTCGATGAGGCTTGCCTGTGGTATGGTAGGAGGATTGGCTTAAACAAATTGAGCTATGAAGAGAGGACTCCTCTCATGATTGCTGCCATGTTTGGAAGCAAGGGCGTGCTAAGTTATATACTCGAAACCGGTCATGTTGATGTTAACAGGACTTGTGGAGGAGATGGGGCTGCAGCCCTTCATTGTGCTGTTGCTGGGGGTTCAGCCTCATCCCCTGAGGTTGTAAAGCTTTTGCTTGATGCACGTGCAGATGTTAGTGCCGTTGATGCTAATGGTAACCAACCTTGTGACTTGATTGTTTCTGGGGCTAATTCGATCTTCAATTCAAGGAAGAGGATCCTTCAAACCATACTGAAAGGTAAGGATGTTATTGATGGGGCATGTCTCCCATTTGAGGATACCGTTAGCCAGATGGAGCAACAGAAACAGCCAGAGATGGCTGCATCTCATGTTTCGAAAGATGTGACTGAGAAGAAGGATTATCCTATTGATCTCTCTCTTCCTGACATAAAGAGTGGGATTTATGGTACTGATGAGTTTAGGATGTATACATTCAAGGTAAAGCCTTGCTCAAGGGCTTATTCTCATGATTGGACTGAGTGCCCCTTTGTTCATCCAGGGGAAAATGCTAGGCGACGGGATCCTAGAAAGTATCATTATAGCTGTGTCCCTTGTCCAGAGTTTCGGAAGGGATCATGCAGCAAGGGAGATGCCTGTGAATATGCACATGGTATTTTTGAGTGCTGGCTTCACCCAGCCCAGTATCGCACACGGCTTTGCAAGGATGAGGGTGCTTGCACCAGAAGGGTTTGCTTTTTTGCTCATAAGCCTGAGGAGCTTCGCCCCTTGTACCCTTGCACTGGGTCAGCTATACCTTCTCCCAGATCATTTTCATCTAGTTCTTGTTCATTGGATATGGGATCGCTTAGCCCACTCTCACTGGGTTCGTCATCTGTCATGATACCTCCAGTCTCAACACCACCTCTTACTCCTTCTGGTGCATCTTCTCCTGTTGGTGGAACCATGTGGCAGGCCCAATCTAATGGTGGGGTCCCTACCCTGCAACTGCCAAGAAGCAGACTAAAAACTGCTTCAAGTGCTAGAGATGTCGATTTAGATATTGCATTACTTGGACTTGAAAATCAACGCCGTAGGCAGCAGATGATGATGGATGAGATTTCTGGTCTTTCCTCGCCATCAAGCTGGAGGAGTTCTGTGCCTGATAGTCATTCTTTTCCTGTCTCTTTCAGTGATCACGCTGGGGAGTTGAATAGGTTTGCAGCAATGAAGCCTACCAACCTTGATGACATTTTTGGGTCAGTTGATCCAACAATTGTGCCTAAATTACAGGGAATTTCACTCGACACTGCTGGACCTCAGTTGCAATCTCCAACTGGGTTCCAGACGCGTCAGAATGCAAACTTGCATCTGCGAAGCTATTCTTCTGGCCTTTCCAATTCAAATGGGATGGGATCGCCGTCTTCTGTGAATGATCCATCTGTATCATCAGCAACCACAATGGCCTTGAATGCACGACTTGCTGCCTTTTCTAAGAGAAGCCAGAGCTTTATTGAGCGCAGCGCAGTAAACTGGCACCCAGAGCTTTCCTCTCCGGTTTCTTCAACGACAAAGGCTTCTGCCTTATCAGACTGGGGATCCCCTGATGGAAAGTTGGACTGGGGCGTCCATGGTGAAGAGTTCAATAAGCTGAGGAAATCCGCTTCTTTTGGATTTCGAAGCAGTAGGAGCACCCCAGTTCCAGCAAATCTCGCTGAACCGGATGTTTCTTGGGTTCATTCACTTGTAAAGGATGCTGCGCCGCAAGAATCCGGTCAATTTAGTGTTGAAGAACAGCAAAAGCAGCAACTGCAATGCCATCGTAAAAATGGAACAGATGCAGTTCCAGCTTGGATGGAACAAATTAACATTGAGCAGGAGCAAATGGTAGCATGA 2118 0.4698 MCSGSKRKPSQAGFVMEDEYGKEEGLHHNTYVLLELAASDDVASFKDAVEQEGLDVDEACLWYGRRIGLNKLSYEERTPLMIAAMFGSKGVLSYILETGHVDVNRTCGGDGAAALHCAVAGGSASSPEVVKLLLDARADVSAVDANGNQPCDLIVSGANSIFNSRKRILQTILKGKDVIDGACLPFEDTVSQMEQQKQPEMAASHVSKDVTEKKDYPIDLSLPDIKSGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDEGACTRRVCFFAHKPEELRPLYPCTGSAIPSPRSFSSSSCSLDMGSLSPLSLGSSSVMIPPVSTPPLTPSGASSPVGGTMWQAQSNGGVPTLQLPRSRLKTASSARDVDLDIALLGLENQRRRQQMMMDEISGLSSPSSWRSSVPDSHSFPVSFSDHAGELNRFAAMKPTNLDDIFGSVDPTIVPKLQGISLDTAGPQLQSPTGFQTRQNANLHLRSYSSGLSNSNGMGSPSSVNDPSVSSATTMALNARLAAFSKRSQSFIERSAVNWHPELSSPVSSTTKASALSDWGSPDGKLDWGVHGEEFNKLRKSASFGFRSSRSTPVPANLAEPDVSWVHSLVKDAAPQESGQFSVEEQQKQQLQCHRKNGTDAVPAWMEQINIEQEQMVA 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1283g00191 705 PANTHER UNKEMPT FAMILY MEMBER 35 659 IPR045234 -
Pral1283g00191 705 FunFam Zinc finger CCCH domain-containing protein 66 232 300 - -
Pral1283g00191 705 Pfam Ankyrin repeats (3 copies) 68 143 IPR002110 GO:0005515
Pral1283g00191 705 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 299 IPR000571 GO:0046872
Pral1283g00191 705 SUPERFAMILY Ankyrin repeat 45 159 IPR036770 -
Pral1283g00191 705 Gene3D - 275 337 - -
Pral1283g00191 705 SMART ANK_2a 75 105 IPR002110 GO:0005515
Pral1283g00191 705 SMART ANK_2a 110 142 IPR002110 GO:0005515
Pral1283g00191 705 Gene3D - 27 174 IPR036770 -
Pral1283g00191 705 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Pral1283g00191 705 ProSiteProfiles Zinc finger C3H1-type profile. 279 301 IPR000571 GO:0046872
Pral1283g00191 705 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Pral1283g00191 705 SMART c3hfinal6 309 332 IPR000571 GO:0046872
Pral1283g00191 705 SMART c3hfinal6 274 300 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1283g00191 Pral-Chr1283 1086486 1089656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1283g00191 28 700 C2H2 Transcription Factor Family AT5G12850 38.687 7.03e-141 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral1283g00191 Ank_2 2.5e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1283g00191 - - aprc:113846970 949.503