Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral1283g00173 | ATGTCCGCCACCCCTGCTGACTTGCACACCAACCCTCTCGCTCAAATGCTTCCGAGCGTCTTCTCCGACAACAGCAACATCATGCTTGCCGCCATCATTTCCCTCCTTCTCGTCATCCTCTTCGTCCTCCTCCTACATCTCTACGCCAAATGGTTCCTGGCCCATGCTCACGCCCAAGCTCAAGCTCGTCGCCGCCGCCGCCGCAGGCGTCGCACGGCATCCGTCACAGTCTCCGACGTCATCGGTCCCGCCCGGTTTCACCACTTCCACAGCTTCAATCTACAAGACTCCCCCATTTCCAACTCCCCCACTAAAGGGCTGGATTCGGCATCCATTGCTGCGATTCCTGTATTCGTATACGAAGCAGATACAATGGACGAAGAAGGTGATGAGCGAGAGTTGGAATGTGTGATTTGCTTGAGCGTTTTTGAGGATGGAGAAAGTGGCCGGAGCTTACCCAAGTGTGGCCATGCTTTTCATGTCGAGTGTATCGATATGTGGTTGAGCTCGCATTCGAATTGCCCAATTTGCAGGGCTCCGATCCCGGAACATGATTCTCAATTGGGTTCTGTTCATGAGGATGACTCCTCTGCTATGCTTGAGATTGTGATCGATTCTCCGGGTTCTGAGATCAGCGAGAACGACCGTGGAACTGAGAGTATTAGTACTAATAATGATAATGAGAATGGAGGGGTAAGTGACTCAGCTATTTCTATATCAGAAACTTCATCCTCATTGTTGGGTTGTTCTTTGAAGAGGATGTTCAGTAAAGTTTTTCCTTCTTCCAATGTCAGTGAGCTAAGCACATGA | 810 | 0.5037 | MSATPADLHTNPLAQMLPSVFSDNSNIMLAAIISLLLVILFVLLLHLYAKWFLAHAHAQAQARRRRRRRRRTASVTVSDVIGPARFHHFHSFNLQDSPISNSPTKGLDSASIAAIPVFVYEADTMDEEGDERELECVICLSVFEDGESGRSLPKCGHAFHVECIDMWLSSHSNCPICRAPIPEHDSQLGSVHEDDSSAMLEIVIDSPGSEISENDRGTESISTNNDNENGGVSDSAISISETSSSLLGCSLKRMFSKVFPSSNVSELST | 269 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral1283g00173 | 269 | MobiDBLite | consensus disorder prediction | 207 | 236 | - | - | |
| Pral1283g00173 | 269 | Pfam | Ring finger domain | 135 | 178 | IPR001841 | - | |
| Pral1283g00173 | 269 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 184 | IPR013083 | - | |
| Pral1283g00173 | 269 | FunFam | RING-H2 finger protein ATL1 | 94 | 183 | - | - | |
| Pral1283g00173 | 269 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 22 | 182 | IPR044675 | - | |
| Pral1283g00173 | 269 | CDD | RING-H2_EL5-like | 135 | 178 | - | - | |
| Pral1283g00173 | 269 | ProSiteProfiles | Zinc finger RING-type profile. | 136 | 178 | IPR001841 | - | |
| Pral1283g00173 | 269 | SUPERFAMILY | RING/U-box | 127 | 184 | - | - | |
| Pral1283g00173 | 269 | SMART | ring_2 | 136 | 177 | IPR001841 | - | |
| Pral1283g00173 | 269 | MobiDBLite | consensus disorder prediction | 211 | 236 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral1283g00173 | Pral-Chr1283 | 934727 | 935940 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral1283g00173 | 20 | 179 | Rapid Response to Elicitors | AT3G16720 | 35.000 | 3.74e-28 | 107 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral1283g00173 | - | - | qsa:O6P43_014072 | 271.937 |