Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1283g00147 ATGTCGACTTCCAGTCAGGATCAAACCCCTCGCCATCACCTCTCTCAATTCCAATTCCATCTTCTCCACTCTCATTCTCAATTTCATCATGATCGCACTTTCACTTCTCAGCCTTTCTCTTCCTTCGCTTCTGACGATGCCCATTCTGCTTTTGCAAAGCTTGCCTTGAGTCAAAGATATGAAGTTGATAATTCCAGGCCTCAAACGAGTAGTACTGAAGTAGCTCCAAATCAGAGCAATATCGTTAATCTTTCTCCACTCAAAACTGAGCCATCCATTAGTGGAAAGCATCATGGTAAATCAAAAGTTTCAAGAAATGAAAAATCAGGGAATCAAAGATCAAATTCTGAGTCTTCTAATTCAACTTCGGTTAATTGCCGTTATGATAGTTCCTTAGGACTTTTAACCAAGAAATTTGTCAGTTTAATTCAGGAGGCTAAGGATGGTACCCTAGATTTAAATAAAACCGCTGAAATCTTGGAGGTCCAGAAAAGGAGAATTTATGATATTACAAATGTTCTTGAAGGAATAGGATTGATAGAAAAGACATCAAAGAACCATATACGGGGAAATGATGGATTGGGGCCTGGCGAACTGGATGATCAAGTTACTACATTAAAGTCTGAAGTTGAAAATCTGTATTCTGAGGAATGCCAACTTGATGATATTATAAGGAAAAAGCAAGAGCTCCTTAGAACTTTCGAGGAAAAAGAAAACCATCAAAAGTACCTTTTCTTGACTGAGGAAGATATTCTTAGCCTTCCATGCTTCCAGGATCAAACACTCATTGCCATCAAGGCTCCCCAAGCTAGTTTCATTGAAATCCCTGATCCTGATGAGGATAATGACTTCAGGCAAAGGCAGTATAAAATGATCGTTAGAAGCACCACGGGACCAATAGACTTGTACCTCTTGAGCAAACACAACGCCAAGGACGAGGATGTTAGCGTCAACCAGGTTACGTCTACAGATCCTTCACAGAACGGTGACCAGTGTGGATTGAAGAGTGCGGGATTACGTTTAGAAAGCCAAGATGCCCAGAAAAATCCTCCTCAAAGTTTTAACGCACTGGACTTGGAGCCACCTGGCATTCAGAAAATTACACCAATGGATTTTGATATCGAAGATGACTACTGGTTCCAATCAGATCATGGAGTGACCCTGACGGATTTGTGGGCGAATGAGGAATTAGTTCACATAGATGAGGTCCTCCAAGACGATTACTTGAATGGTGCCTTCACTTAA 1245 0.4096 MSTSSQDQTPRHHLSQFQFHLLHSHSQFHHDRTFTSQPFSSFASDDAHSAFAKLALSQRYEVDNSRPQTSSTEVAPNQSNIVNLSPLKTEPSISGKHHGKSKVSRNEKSGNQRSNSESSNSTSVNCRYDSSLGLLTKKFVSLIQEAKDGTLDLNKTAEILEVQKRRIYDITNVLEGIGLIEKTSKNHIRGNDGLGPGELDDQVTTLKSEVENLYSEECQLDDIIRKKQELLRTFEEKENHQKYLFLTEEDILSLPCFQDQTLIAIKAPQASFIEIPDPDEDNDFRQRQYKMIVRSTTGPIDLYLLSKHNAKDEDVSVNQVTSTDPSQNGDQCGLKSAGLRLESQDAQKNPPQSFNALDLEPPGIQKITPMDFDIEDDYWFQSDHGVTLTDLWANEELVHIDEVLQDDYLNGAFT 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1283g00147 414 FunFam E2F transcription factor 1 121 192 - -
Pral1283g00147 414 SUPERFAMILY E2F-DP heterodimerization region 202 307 IPR037241 -
Pral1283g00147 414 Gene3D - 122 192 IPR036388 -
Pral1283g00147 414 SMART E2F_TDP_2 127 192 IPR003316 GO:0005667|GO:0006355
Pral1283g00147 414 Pfam E2F transcription factor CC-MB domain 206 305 IPR032198 GO:0046983
Pral1283g00147 414 Gene3D - 197 308 - -
Pral1283g00147 414 PANTHER TRANSCRIPTION FACTOR E2F 89 397 IPR015633 GO:0000978|GO:0006357
Pral1283g00147 414 CDD E2F_DD 201 308 IPR032198 GO:0046983
Pral1283g00147 414 Coils Coil 220 240 - -
Pral1283g00147 414 MobiDBLite consensus disorder prediction 62 90 - -
Pral1283g00147 414 SUPERFAMILY "Winged helix" DNA-binding domain 127 188 IPR036390 -
Pral1283g00147 414 MobiDBLite consensus disorder prediction 108 124 - -
Pral1283g00147 414 Pfam E2F/DP family winged-helix DNA-binding domain 129 189 IPR003316 GO:0005667|GO:0006355
Pral1283g00147 414 MobiDBLite consensus disorder prediction 62 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1283g00147 Pral-Chr1283 806513 811558 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1283g00147 2 394 E2F-DP Transcription Factor Family AT1G47870 45.327 1.45e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pral1283g00147 E2F_CC-MB 1.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1283g00147 K06620 - qsa:O6P43_016265 459.914