Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1283g00146 ATGTCGACTTCCAGTCAGGATCAAACCCCTCGCCATCACCTCTCTCAATTCCAATTCCATCTTCTCCACTCTCATTCTCAATTTCATCATGATCGCACTTTCACTTCTCAGCCTTTCTCTTCCTTCGCTTCTGACGATGCCCATTCTGCTTTTGCAAAGCTTGCCTTGAGTCAAAGATATGAAGTTGATAATTCCAGGCCTCAAACGAGTAGTACTGAAGTAGCTCCAAATCAGAGCAATATCGTTAATCTTTCTCCACTCAAAACTGAGCCATCCATTAGTGGAAAGCATCATGGTAAATCAAAAGTTTCAAGAAATGAAAAATCAGGGAATCAAAGATCAAATTCTGAGTCTTCTAATTCAACTTCGGTTAATTGCCGTTATGATAGTTCCTTAGGACTTTTAACCAAGAAATTTGTCAGTTTAATTCAGGAGGCTAAGGATGGTACCCTAGATTTAAATAAAACCGCTGAAATCTTGGAGGTCCAGAAAAGGAGAATTTATGATATTACAAATGTTCTTGAAGGAATAGGATTGATAGAAAAGACATCAAAGAACCATATACGGTGGAAGGGAAATGATGGATTGGGGCCTGGCGAACTGGATGATCAAGTTACTACATTAAAGTCTGAAGTTGAAAATCTGTATTCTGAGGAATGCCAACTTGATGATATTATAAGGAAAAAGCAAGAGCTCCTTAGAACTTTCGAGGAAAAAGAAAACCATCAAAAGTACCTTTTCTTGACTGAGGAAGATATTCTTAGCCTTCCATGCTTCCAGGATCAAACACTCATTGCCATCAAGGCTCCCCAAGCTAGTTTCATTGAAATCCCTGATCCTGATGAGGATAATGACTTCAGGCAAAGGCAGTATAAAATGATCGTTAGAAGCACCACGGGACCAATAGACTTGTACCTCTTGAGCAAACACAACGCCAAGGACGAGGATGTTAGCGTCAACCAGGTTACGTCTACAGATCCTTCACAGAACGGTGACCAGTGTGGATTGAAGAGTGCGGGATTACGTTTAGAAAGCCAAGATGCCCAGAAAAATCCTCCTCAAAGTTTTAACGCACTGGACTTGGAGCCACCTGGCATTCAGAAAATTACACCAATGGATTTTGATATCGAAGATGACTACTGGTTCCAATCAGATCATGGAGTGACCCTGACGGATTTGTGGGCGAATGAGGAATTAGTTCACATAGATGAGGTCCTCCAAGACGATTACTTGAATGGTGCCTTCACTTAA 1251 0.4101 MSTSSQDQTPRHHLSQFQFHLLHSHSQFHHDRTFTSQPFSSFASDDAHSAFAKLALSQRYEVDNSRPQTSSTEVAPNQSNIVNLSPLKTEPSISGKHHGKSKVSRNEKSGNQRSNSESSNSTSVNCRYDSSLGLLTKKFVSLIQEAKDGTLDLNKTAEILEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGNDGLGPGELDDQVTTLKSEVENLYSEECQLDDIIRKKQELLRTFEEKENHQKYLFLTEEDILSLPCFQDQTLIAIKAPQASFIEIPDPDEDNDFRQRQYKMIVRSTTGPIDLYLLSKHNAKDEDVSVNQVTSTDPSQNGDQCGLKSAGLRLESQDAQKNPPQSFNALDLEPPGIQKITPMDFDIEDDYWFQSDHGVTLTDLWANEELVHIDEVLQDDYLNGAFT 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1283g00146 416 Gene3D - 122 194 IPR036388 -
Pral1283g00146 416 CDD E2F_DD 203 310 IPR032198 GO:0046983
Pral1283g00146 416 Coils Coil 222 242 - -
Pral1283g00146 416 PANTHER TRANSCRIPTION FACTOR E2F 89 399 IPR015633 GO:0000978|GO:0006357
Pral1283g00146 416 FunFam E2F transcription factor 1 121 194 - -
Pral1283g00146 416 Pfam E2F transcription factor CC-MB domain 208 307 IPR032198 GO:0046983
Pral1283g00146 416 Pfam E2F/DP family winged-helix DNA-binding domain 129 192 IPR003316 GO:0005667|GO:0006355
Pral1283g00146 416 Gene3D - 199 310 - -
Pral1283g00146 416 SUPERFAMILY "Winged helix" DNA-binding domain 127 190 IPR036390 -
Pral1283g00146 416 MobiDBLite consensus disorder prediction 62 90 - -
Pral1283g00146 416 MobiDBLite consensus disorder prediction 108 124 - -
Pral1283g00146 416 SUPERFAMILY E2F-DP heterodimerization region 204 309 IPR037241 -
Pral1283g00146 416 MobiDBLite consensus disorder prediction 62 124 - -
Pral1283g00146 416 SMART E2F_TDP_2 127 192 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1283g00146 Pral-Chr1283 806513 811558 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1283g00146 2 396 E2F-DP Transcription Factor Family AT1G47870 45.794 7.49e-104 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pral1283g00146 E2F_CC-MB 1.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1283g00146 K06620 - qsa:O6P43_016265 469.929