Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1283g00137 ATGAACCAGAGTGATATCGTCAGATTCTTGACTACAACTATCGATAGCTTCATTCAAGATCGGTTAATCGACAAAGAACGACGGATCCAACACAAAGAACAGTGTGCAGAGAGGTTAGCAGCTGAAGATGAAAGCACTGATAAAGACAGCGAGGTTCAATACTCTGATCAAGCAGTATTAGCAAATCTTGATTGGGGTATGGAAGCCCTTGAAGAAGCCATAAATACCTATAATATGGAAACTAAGATTGCCCGCCTAGATTATGCTGAGAAGATGTTACAAGTGTGTGCCATGTTGAATCCCAATCAAAATACTGCTGGGGTGCCCAATTTCTACCTCTCAGCTTGGGCTCACCTTAATCTATCCTACCTGTGGAAGTTGAAGAACAATACTCAAAATTCAATTTGCCACGCTCTTGAGATGTTCATCGTTGACCCTTTCTTCTCACGGATTGATTTTGCCCCAGAGCTTTGGAAAGATCTGTTTCTTCCACACATGGGCTCCATTGTGGGTTGGTATTCAGAGGAGAGGCATGGACTTATGATGGAAGTCATGCCCGACTCTCCAGATTTGTCCTTTACAGCTGATTTTGATCAATTCTTCAATGAGTCTTTGATATATACTATGAGGCCACATCAAGTAGAGAAACTGCAAAAGCTGGAGAAGCTTTATGGAGAGTCATTGGACAAAAACACGAGACTTTATGCAAAGTATTATAAGGATTGCGTCAGCCCTGATTCAACCTCCAGCAAGAAGGCTCCAATGTTACCGATTGCTGAGCCACCGATGACACCTCTGCATGAATTGAGCTGCACCATTCCTGATTATGTAAAATTTGGTCCTATATTGCCTAAGAGTGCTGGGTTTTCTCCTGTTCTGAAATCTAAAGATGGTGCAAACGAAACTATCAGAGGGAATGCGACTTCCAGCCATTCACCAAAGGCAGAGAAGTCTTCATCTACACGGGGTGCTAAGGAGAGTACCATTGGAGAGTATGAAGATTCAGAATATGACCTCAATGATTCATACATTGACCCAGATAGAAAAACTCAAACTATTGTATCTCTTAGGATTAACAATATCAAGGGTGAGGATGTTGGGCCAAAAGTACATCAATCAAACCAGAAGAATCAAATATATTCTCCTCCAGTTTTCTCTCCTTTGGATTCTCCAAGAGCTCCTCCAAAAAATTCATCTTCAATTCATGAGATACACACTAAAGGAGAACCCAAATCTTTGCGCTTATTGTCTAGGCGTTTTTCAGACTCAAGTATTTCCAACTCTTCACCAATATCTCCACACATGAGTACTGATCACAGTATCAGCTCAGAAGATTCTGATAACGAAATAATGGGCGTGAAGAACAGTCAGAGGAAAAACCGTTACTGAAAAGACTTTAATCATGAGAAAGAGAATACCCTCTCATTCAATGACAATTCTGTTTATGAGAGCCATGAAGGAAATAGCAGTAGCAGTTTATCACTGAAATCAGAGAAGACGACCGTTCAATCAAGACCACCCAAAGATTTTGTTTGCCCTATCACAGGCCAGATATTTTGCGATCCTGTCACCCTTGAAACAGGCCAGACGTATGAAAGAAAAGCAATTCAGGAGTGGCTCAAAACAGGAAATACAACATGTCCCATTACACGGCAATCTCTCTGTGCTAGCATGCTACCTAAAACAAACTATGTCTTGAAGAGATTGATAACATCGTGGAAAGAACAGCATCCAGAACTAGCTCAGGAGTTCTCAAATTCAGACTCATTACGGGCTTCTCTAAATTCTCCCTCTATCAAAGATATACCAGTGGTCTCTAATATGCACAGAACAGCTGATTCACCAGCTCATAAGATTGCAGATGATTATATTAGACAAAGGAGCAAAAGATTTATGCAGATCTCTGCCGCATCATCACCAACTAGTGTAATATCTCAAGCTGCAGTTGAAACAACTATAAATTGTTTGAAACCTTATATTTCAAGTCTTTGCACATCAGAAGACTTGCAAGAATGTGAAGACTCTGTGCTGGTAATAGCTAGATTATGGAAGGACTCAAAGAATGATCCTCATATTCATTCTTATTTATCGAATCCAACTGTTATAAATGGTTTAGTGGAAATACTTTCAGCTTCTCTAAACAGAGAAGCCCTGAGAACGTCAATTTATATCCTCTCTGAACTAATTTTTGCAGATGAAAGTGTTGGAGAAATACTCTCCAATGTTGATTCTGACTTCGATTGCTTGGCTACTTTGCTCAAGAATGGTTTAATTGAGGCTGCTGTTCTAATTTACCAACTGAGGCCGGTTTATGATCAGCTCTCTGCTCATGAACTAATACCCTCCATTGTCCAGCAGATCCAGAACAAAAATGAGGAGTTTAACGACCTTCGGTTCCTTATTGATCCTAGAGATGCATCTGTAGCAATTCTTGAGCAGATTTTGTTAGGAGGGAATGAACATAGCAGGTCCCTCAATGCCTTGAGTGTCATTTCAGCAAATGGAATTCCAATCTTGGTCAAGTATATGGAAAGGATGGAAGGAAGGAGGTCTGTTGTTTCCATTCTTCTGTGCTGTATGCAAGCTGAAAAAAGTTGCAGGAGCTTAATTGCAAACAGAATTGAACTATCTCCTATTCTTGAATTATTTCATTCAGGAAATGACACTGTCAGAGGAATATGTGTGGAGTTTCTCTCACAACTTGTTCAATTGCACAGGAGGACAATGTGCAACAAGATATTGCAGATTATCAAGGATGAGGGAACATTTAGTACCATGCACACATTTCTTGTGTATCTTCAGATGGCTCCTATGGATCACCAACTTGCAGTTGCTGGTCTTTTGCTTCAGCTTGATCTCTTGGTTGAGCCCCGAAAGATGAGCATTTTCAGGGAAGAAGCTGTAGAGACCCTGATAGAATCACTTTGGCGAAAGGACTTCTTAAATACTCAGACGAAGGCTTTAGATGCTTTAATACTTCTTATCGGGCATATCACTTCTGCAGGAAAGCCATACATTGAAGCCTGGCTGCTTAAGACTGCAGGATTTGACCAACCTTACAATGCTCTAATGAAAGCTGAGCAGTTGGAAAAATATGACAACGATTTGGTGGAAACAATGGAGGATGAAGAGAATGCGATGAGCTCTTGGCAGAAAAGGGTAGCTTTTGTTCTTTGCAACCATGAAAAGGGTTCTATATTTAAAGCTTTAGAAGAATGCCTCAAGAGTAGTTCCCTAGAGACAGCAAAATCATGCCTTGTCGTCGCCACATGGCTCACATGTATGCTCTCAGCCATTCCTGATACTGGTATAAGGGATGTTGCTCGAAAATCCTTGCTCGAGGAACTTATAAATGTCCTCCAATCATCCAAGAACCTCGAGGAAATGATCCTAGCTACCCTTGCTTTGAAGAACTTTATTAGTGATCCAATTGCTCTTGAAGCACTCGGAGCTTATGCCAAAAGCATCTATAGAACATTGAGAAAGTTGAAGAAATATTCTATGGTGGCAGCCGATATTATGAAACCCTTACTGAACTTAAAATCCGTTGATGTGACAGCTTTGTGGAGTTGTAAGGAAGTCGTTGAGTTAGATTTGAGCTCAAATGGAGAGGTACTTTCTTTGCTCTATGTTAAAGGTCGGGTCTTAAGTGGACACTCCGATGGAACCATGAAGGTGTGGGATGCTAGGAAGAAAGTATTAAGATTGATTCAAGAAACCCATGAGCACACTAAAGCGGTAACATGTCTCTACTCTTCAGGGGATAAACTGTACAGTGGCTCCTTAGACAAAACCATCCGGGTATGGACAATGAAATATGATGAGCTTCATTGTATTCAAGTTCATGATATCAAAGAGGCGGTGCATGAGTTAATAGCAAATGATAAATTGGCATGCTACGTGACTCAAGGAACAGGAGCTAAGGTGTATAATTGGTCGGAGGCTCCAAAGCTTATTAATTTCAACAAACATGTCAAATGCCTTGCAATGTCTGGGAACAAACTCTACTGTGGTTGCTCTGGTTACAGTGTTCAGGAGGTAGACTTGTCGAATTATACATCAAATACAATTTTGTCCGGGACAAGAAAATTGCTGGGAAAACAAACCATTCACTCCCTTCTGATTTATGATGATTGTCTCATCGCTGGTGGTTCTTTGGTTGATTCCACCGCAGGAAAGATATTGTCGCTGTCGTCCAAAGCTGTGGTGGGGTCACTCTCAACTGGTCTAGACATCCACCGTATGGCTATGAACAATGACTTTGTATTTACAGGCACTAAATGTGGCACTATTGAGGTGTGGCTAAAATATAAGTTAAGTAGGGTTGCTTCCATCAAAATGGCTGGTGGTCACCCAAGAATCACGTCACTAGCATCAGATGCAGATGGTTTCATGCTTTTTGTTGGTTCCTCGGACGGCAAGATTCAGGCCTGGGCTTTGGATTAG 4446 0.4107 MNQSDIVRFLTTTIDSFIQDRLIDKERRIQHKEQCAERLAAEDESTDKDSEVQYSDQAVLANLDWGMEALEEAINTYNMETKIARLDYAEKMLQVCAMLNPNQNTAGVPNFYLSAWAHLNLSYLWKLKNNTQNSICHALEMFIVDPFFSRIDFAPELWKDLFLPHMGSIVGWYSEERHGLMMEVMPDSPDLSFTADFDQFFNESLIYTMRPHQVEKLQKLEKLYGESLDKNTRLYAKYYKDCVSPDSTSSKKAPMLPIAEPPMTPLHELSCTIPDYVKFGPILPKSAGFSPVLKSKDGANETIRGNATSSHSPKAEKSSSTRGAKESTIGEYEDSEYDLNDSYIDPDRKTQTIVSLRINNIKGEDVGPKVHQSNQKNQIYSPPVFSPLDSPRAPPKNSSSIHEIHTKGEPKSLRLLSRRFSDSSISNSSPISPHMSTDHSISSEDSDNEIMGVKNSQRKNRYSXKDFNHEKENTLSFNDNSVYESHEGNSSSSLSLKSEKTTVQSRPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLKTGNTTCPITRQSLCASMLPKTNYVLKRLITSWKEQHPELAQEFSNSDSLRASLNSPSIKDIPVVSNMHRTADSPAHKIADDYIRQRSKRFMQISAASSPTSVISQAAVETTINCLKPYISSLCTSEDLQECEDSVLVIARLWKDSKNDPHIHSYLSNPTVINGLVEILSASLNREALRTSIYILSELIFADESVGEILSNVDSDFDCLATLLKNGLIEAAVLIYQLRPVYDQLSAHELIPSIVQQIQNKNEEFNDLRFLIDPRDASVAILEQILLGGNEHSRSLNALSVISANGIPILVKYMERMEGRRSVVSILLCCMQAEKSCRSLIANRIELSPILELFHSGNDTVRGICVEFLSQLVQLHRRTMCNKILQIIKDEGTFSTMHTFLVYLQMAPMDHQLAVAGLLLQLDLLVEPRKMSIFREEAVETLIESLWRKDFLNTQTKALDALILLIGHITSAGKPYIEAWLLKTAGFDQPYNALMKAEQLEKYDNDLVETMEDEENAMSSWQKRVAFVLCNHEKGSIFKALEECLKSSSLETAKSCLVVATWLTCMLSAIPDTGIRDVARKSLLEELINVLQSSKNLEEMILATLALKNFISDPIALEALGAYAKSIYRTLRKLKKYSMVAADIMKPLLNLKSVDVTALWSCKEVVELDLSSNGEVLSLLYVKGRVLSGHSDGTMKVWDARKKVLRLIQETHEHTKAVTCLYSSGDKLYSGSLDKTIRVWTMKYDELHCIQVHDIKEAVHELIANDKLACYVTQGTGAKVYNWSEAPKLINFNKHVKCLAMSGNKLYCGCSGYSVQEVDLSNYTSNTILSGTRKLLGKQTIHSLLIYDDCLIAGGSLVDSTAGKILSLSSKAVVGSLSTGLDIHRMAMNNDFVFTGTKCGTIEVWLKYKLSRVASIKMAGGHPRITSLASDADGFMLFVGSSDGKIQAWALD 1482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1283g00137 1482 MobiDBLite consensus disorder prediction 301 326 - -
Pral1283g00137 1482 SUPERFAMILY RING/U-box 497 579 - -
Pral1283g00137 1482 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1448 1482 - -
Pral1283g00137 1482 Pfam WD domain, G-beta repeat 1241 1270 IPR001680 GO:0005515
Pral1283g00137 1482 SUPERFAMILY ARM repeat 623 1146 IPR016024 -
Pral1283g00137 1482 MobiDBLite consensus disorder prediction 417 439 - -
Pral1283g00137 1482 SUPERFAMILY WD40 repeat-like 1214 1481 IPR036322 GO:0005515
Pral1283g00137 1482 Gene3D - 1197 1482 IPR015943 GO:0005515
Pral1283g00137 1482 SMART Ubox_2 510 574 IPR003613 GO:0004842|GO:0016567
Pral1283g00137 1482 MobiDBLite consensus disorder prediction 474 501 - -
Pral1283g00137 1482 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 489 589 IPR013083 -
Pral1283g00137 1482 CDD RING-Ubox_PUB 508 555 IPR045210 -
Pral1283g00137 1482 Gene3D - 932 1196 IPR011989 -
Pral1283g00137 1482 ProSiteProfiles Trp-Asp (WD) repeats profile. 1241 1273 IPR001680 GO:0005515
Pral1283g00137 1482 Pfam U-box domain 508 578 IPR003613 GO:0004842|GO:0016567
Pral1283g00137 1482 MobiDBLite consensus disorder prediction 364 501 - -
Pral1283g00137 1482 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1481 - -
Pral1283g00137 1482 ProSiteProfiles Trp-Asp (WD) repeats profile. 1448 1482 IPR001680 GO:0005515
Pral1283g00137 1482 MobiDBLite consensus disorder prediction 440 473 - -
Pral1283g00137 1482 Gene3D - 658 931 IPR011989 -
Pral1283g00137 1482 ProSiteProfiles U-box domain profile. 506 581 IPR003613 GO:0004842|GO:0016567
Pral1283g00137 1482 MobiDBLite consensus disorder prediction 370 384 - -
Pral1283g00137 1482 MobiDBLite consensus disorder prediction 402 416 - -
Pral1283g00137 1482 SMART WD40_4 1439 1480 IPR001680 GO:0005515
Pral1283g00137 1482 SMART WD40_4 1234 1271 IPR001680 GO:0005515
Pral1283g00137 1482 SMART WD40_4 1191 1229 IPR001680 GO:0005515
Pral1283g00137 1482 SMART WD40_4 1400 1436 IPR001680 GO:0005515
Pral1283g00137 1482 MobiDBLite consensus disorder prediction 290 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1283g00137 Pral-Chr1283 753389 760673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1283g00137 489 893 U-box Gene Family AT1G23030 26.456 2.39e-19 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1283g00137 - - gmx:100776142 2161.34