Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral1283g00071 | ATGAAAGGTGGCAAATCGAAGGCTGAATCTAAGAGAGCTGATGCCAAGCTTGCTGTGAATAAGAAGGGCGGCGCCGCCACCAAAGCTGGAAGAAAATCAAGTAAGGGGAAGGCGGCGAAAGACCCTAACAACCAAAGAGACCGGCCAGTGCCTTCTTTGTTTTTCATGGAGGAGTTTAGGAAGCAGTTTAACAAGGAAAATCCTGACAACAAAGCAGTGTCTGCTGTTGGCAAAGCTGCTGGGGCAAAATGGAAGGCCATGTCTGATGCCGAGAAAGCACCCTATGTAGCTAAAGCAGAGAAACGAAAGGCTGAGTATGAGAAGAATATGAAAGCGTATAACAAGCGACAGGCGGAAGGTCCAAATGCTGCAGATGAAGAAGAATCTGAGAAATCAGTTTCTGAGGTGAATGATGAAGATGAAGGAGATGAAGAGGGCAGTGATGAGGAGGAAGATGACGAGTAG | 465 | 0.471 | MKGGKSKAESKRADAKLAVNKKGGAATKAGRKSSKGKAAKDPNNQRDRPVPSLFFMEEFRKQFNKENPDNKAVSAVGKAAGAKWKAMSDAEKAPYVAKAEKRKAEYEKNMKAYNKRQAEGPNAADEEESEKSVSEVNDEDEGDEEGSDEEEDDE | 154 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral1283g00071 | 154 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 45 | 114 | IPR009071 | - | |
Pral1283g00071 | 154 | SMART | hmgende2 | 48 | 115 | IPR009071 | - | |
Pral1283g00071 | 154 | MobiDBLite | consensus disorder prediction | 81 | 154 | - | - | |
Pral1283g00071 | 154 | Pfam | HMG (high mobility group) box | 53 | 114 | IPR009071 | - | |
Pral1283g00071 | 154 | Coils | Coil | 96 | 116 | - | - | |
Pral1283g00071 | 154 | Gene3D | High mobility group box domain | 28 | 130 | IPR036910 | - | |
Pral1283g00071 | 154 | MobiDBLite | consensus disorder prediction | 94 | 130 | - | - | |
Pral1283g00071 | 154 | SUPERFAMILY | HMG-box | 31 | 115 | IPR036910 | - | |
Pral1283g00071 | 154 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
Pral1283g00071 | 154 | MobiDBLite | consensus disorder prediction | 131 | 154 | - | - | |
Pral1283g00071 | 154 | CDD | HMG-box_AtHMGB1-like | 53 | 106 | - | - | |
Pral1283g00071 | 154 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 4-RELATED | 1 | 149 | IPR031061 | - | |
Pral1283g00071 | 154 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral1283g00071 | Pral-Chr1283 | 424930 | 426801 | Dispersed/Tandem |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | HMG | Pral1283g00071 | HMG_box | 5.5e-19 | CL0114 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral1283g00071 | K25507 | - | qsa:O6P43_018776 | 178.718 |