Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1283g00071 ATGAAAGGTGGCAAATCGAAGGCTGAATCTAAGAGAGCTGATGCCAAGCTTGCTGTGAATAAGAAGGGCGGCGCCGCCACCAAAGCTGGAAGAAAATCAAGTAAGGGGAAGGCGGCGAAAGACCCTAACAACCAAAGAGACCGGCCAGTGCCTTCTTTGTTTTTCATGGAGGAGTTTAGGAAGCAGTTTAACAAGGAAAATCCTGACAACAAAGCAGTGTCTGCTGTTGGCAAAGCTGCTGGGGCAAAATGGAAGGCCATGTCTGATGCCGAGAAAGCACCCTATGTAGCTAAAGCAGAGAAACGAAAGGCTGAGTATGAGAAGAATATGAAAGCGTATAACAAGCGACAGGCGGAAGGTCCAAATGCTGCAGATGAAGAAGAATCTGAGAAATCAGTTTCTGAGGTGAATGATGAAGATGAAGGAGATGAAGAGGGCAGTGATGAGGAGGAAGATGACGAGTAG 465 0.471 MKGGKSKAESKRADAKLAVNKKGGAATKAGRKSSKGKAAKDPNNQRDRPVPSLFFMEEFRKQFNKENPDNKAVSAVGKAAGAKWKAMSDAEKAPYVAKAEKRKAEYEKNMKAYNKRQAEGPNAADEEESEKSVSEVNDEDEGDEEGSDEEEDDE 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1283g00071 154 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 45 114 IPR009071 -
Pral1283g00071 154 SMART hmgende2 48 115 IPR009071 -
Pral1283g00071 154 MobiDBLite consensus disorder prediction 81 154 - -
Pral1283g00071 154 Pfam HMG (high mobility group) box 53 114 IPR009071 -
Pral1283g00071 154 Coils Coil 96 116 - -
Pral1283g00071 154 Gene3D High mobility group box domain 28 130 IPR036910 -
Pral1283g00071 154 MobiDBLite consensus disorder prediction 94 130 - -
Pral1283g00071 154 SUPERFAMILY HMG-box 31 115 IPR036910 -
Pral1283g00071 154 MobiDBLite consensus disorder prediction 1 53 - -
Pral1283g00071 154 MobiDBLite consensus disorder prediction 131 154 - -
Pral1283g00071 154 CDD HMG-box_AtHMGB1-like 53 106 - -
Pral1283g00071 154 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 149 IPR031061 -
Pral1283g00071 154 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1283g00071 Pral-Chr1283 424930 426801 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pral1283g00071 HMG_box 5.5e-19 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1283g00071 K25507 - qsa:O6P43_018776 178.718