Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1283g00068 ATGAAAGGCGACAAATCGAAGGCGGACTCTAAGAAAGCTGATGCCAAGCTTGCTGTGAATAGGAAAGGCGCTGGCGCCACCAAGGCAGGCAGGAAACCAAGCAAGGGGAAGGCGGCGAAAGACCCTAACAAACCAAAGAGACCGGCCAGTGCCTTCTTTGTTTTCATGGAGGAGTTTAGGAAGCAGTTTAACAAGGAAAATCCTGACAACAAAGCGGTGTCTGCTGTTGGCAAAGCTGCTGGGGCTAAATGGAAATCTATGTCTGATGCTGAGAAAGCGCCCTATGTAGCTAAAGCAGAGAAACGAAAGGCTGAGTATGAGAAGAATATGAAAGCCTATAACAAGAGACAGGCGGAAGGTCCAAATGCTGCAGACGAAGAAGAATCTGAGAAGTCAATGTCTGAGGTTAATGATGCCGACGGGGGAGATGAAGAGGGCAGTGATGAGGAGGAAGATGACGAGTAG 465 0.4882 MKGDKSKADSKKADAKLAVNRKGAGATKAGRKPSKGKAAKDPNKPKRPASAFFVFMEEFRKQFNKENPDNKAVSAVGKAAGAKWKSMSDAEKAPYVAKAEKRKAEYEKNMKAYNKRQAEGPNAADEEESEKSMSEVNDADGGDEEGSDEEEDDE 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1283g00068 154 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 45 114 IPR009071 -
Pral1283g00068 154 SMART hmgende2 44 115 IPR009071 -
Pral1283g00068 154 MobiDBLite consensus disorder prediction 1 49 - -
Pral1283g00068 154 MobiDBLite consensus disorder prediction 94 138 - -
Pral1283g00068 154 Pfam HMG (high mobility group) box 45 114 IPR009071 -
Pral1283g00068 154 CDD HMG-box_AtHMGB1-like 46 106 - -
Pral1283g00068 154 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 150 IPR031061 -
Pral1283g00068 154 Coils Coil 96 116 - -
Pral1283g00068 154 MobiDBLite consensus disorder prediction 139 154 - -
Pral1283g00068 154 Gene3D High mobility group box domain 29 130 IPR036910 -
Pral1283g00068 154 SUPERFAMILY HMG-box 33 121 IPR036910 -
Pral1283g00068 154 MobiDBLite consensus disorder prediction 1 18 - -
Pral1283g00068 154 MobiDBLite consensus disorder prediction 79 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1283g00068 Pral-Chr1283 419287 421184 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pral1283g00068 HMG_box 4.6e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1283g00068 K25507 - qsa:O6P43_018776 218.394