Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1283g00063 ATGAATTTGCTTTGGGCTGTTTCTTGCCTGTTCGTGCTTTTCACAGTGCCTCCTTATGCCATCAGCGGTAATTCGTCGAGGCCGGCCGTCGTGCATATCGGTGCTCTCTTCACCTTTGATTCTACTATTGGGAAAGTTGCTAAAATCGCGTTGGAGGAAGCCGTGAAGGATGTAAACGCCAATGCTAGCGTACTCCCTGGAACTAAACTTGTCCTTACTGAGCAAAATTCCAATTGCAGTGGTTTTTTGGGCATGGTTCAAGCTCTGCGGTTCATGGAGACTGATGTGGTGGCAATCATAGGCCCACAATCTTCCGTTGTTGCTCACATAATATCTCATGTGGCAAATGAGCTTCAGGTCCCTCTGTTGTCATTTGCAGCGACGGACCCAACCCTATCCAACCTACAGTTTCCTTTTTTCGTGAGAACAACGATGAGTGATTTGTACCAAATGGCTGCAGTTGCCGAAATTGTTGATTATTATGGTTGGAAGGAGGTCATTGCTATTTTTATAGATGATGATTTCGGACGAAATGGCGTGTCAGCCTTGGATGATCAATTATCAGCTAGGCGCTGTAGAATCTCTTACAAGGCAGGAATTAGATCAGGAACTGGAGTTGATCGGGGTGAAATCACGGATTTGCTGGTGCAGGTGGCTCTAATGCAATCTCGGGTCATTGTTCTCCATGCAAATCCTGATTCAGGATTTATGGTTTTCAATGTTGCACAGTATCTTGGGATGACAGGGAATGGCTACGTCTGGATAGCCACAGACTGGCTCTCCTCTGTTGTGGATTCTACTTCTCTCCCTTCGGATACAATGAGTGTTCTTCAGGGCGTTCTTGTTTTACGCCAACATACTCCTGATTCAGATAGTAAAACAGCATTTCTGTCTAGGTGGAACAAGTTTACTGGAGGCTCTGTGGGGTTACATTCTTATGGCCTTCATGCATATGATACCGTTTGGCTGCTTGCACATGCTATTGATGCATTCTTCAACCAGGGTGGGATTATATCATTTTCTAACGACTCTAGGATACATGATGCTGACGAGAGTAATCTTAACCTTGAGGCAATGAGCATTTTTGACAATGGAACGCTTCTCTTGAACAACATATTGCAGAGCAACTTTGTTGGTTTAACAGGTCCCGTAAAATTTGAGTCAGATAAATCTCTTGTTCGCCCTGCATATGATATTATCAATGTGGTGGGAACTGGTATTCGTCAGGTTGGTTACTGGTCCAACTATTCTGGTCTGTCCATTGTACCTCCTGAGACATTGTATGCTAAGCCTCCTAATCGCTCAAGTGCAAACCAACAACTTCATGCTGTAATATGGCCTGGAGAAACACTATCAAAACCCCGTGGATGGGTTTTTCCAAACAATGGAAAACAATTGAGAATTGGTGTACCTATCCGATTTAGTTACCGTGACTTTGTATCACCCATTCAAGGAACTGATATGTTTAAAGGTTTCTGCATTGATATATTCACGGCAGCTCTAAACTTGTTACCGTATGCTGTTCCATATCGCTTTGTCCCATTTGGAGATGGCCGTAAAAACCCAAACTACGATGAACTTGTTAGGTTGATCACCACAGGGTACTTCGATGGTGCTGTTGGTGACATTGCCATTGTCACAAACCGGACAAAGGTTGTAGATTTTACACAGCCATACATTGAATCTGGACTTGTTGTGGTGGCGCCTTTTAAGAAAACAAACTCTGGTGGATGGTCTTTTCTGCGGCCATTTACTCCTTTAATGTGGATTGTCACCGCTTCTTTCTTCTTTTTCATTGGGATAGTTGTATGGATTCTGGAGCATAGAATAAATGACGAGTTCAGGGGTCCACCTAGACAGCAAATTATAACCATTTTATGGTTCAGCTTGTCAACTCTATTCTTTGCCCATAGAGAGAATACTATGAGTACTCTTGGTCGCGTGGTGGTAATCATATGGCTGTTTGTAGTTTTGATAATCAATTCTAGCTACACAGCAAGTTTGACATCAATCCTCACAGTGCAGCAACTATCTTCTCCTATCAGTGGAATAGACAGCTTAAAAGCCGGTGATGAACCTATAGGGTATCAAGTGGGTTCATTCGCAGAACATTATTTGGCTGACGATGTTGGAATATCCAAATCCAGGCTTGTTGCCCTTGGATCTCCTGAAGAATATGCCAAGGCTCTCCAGCTTGGTCCTGAGAAAGGAGGTGTTGCTGCTATAGTTGACGAACGACCCTATGTTGAAATTTTCCTATCAACCCATTGCAGCTTCAGGATAGTAGGTCAGGAATTCACCAGAAGCGGCTGGGGGTTTGCATTCCCACGGGACTCCCCTCTGGCCATTGACTTGTCAACTGCAATTCTACAACTTTCTGAAAATGGTGAACTGCAGCGGATTCATGATAAGTGGCTCCTAGGAAGAGCCTGCAGTACGGATGATACTGAAATCGATTCAGATCGGCTTCGGTTTAAAAGCTTCTGGGGTCTCTTCCTTATGTGTGGGATTGCTTGCATTGTTGCGCTTTCTATCTATTTTCTGCAGATTGTGCTGCAGTTACGCCATTCTGCTCCTGCTCAACCGGCTGCTTCCAATGGAAGCTCAGTTTCTCGACATTTTCGGAGATTTATTTCACTGATCGATGAGAAGAAAGAACGGTCCAATAACAGCGGTAGAAAGAGGGTTGAAGCCCAAAGATCATCAGAAGAAGATGGATTGGGGAGGCAGCTAAAGAGGTTACAAACTGAAACAAGTCAAACAACTACTCAACTCAATTTTTCAGTACAAAAGGATCAGGTATAA 2805 0.4381 MNLLWAVSCLFVLFTVPPYAISGNSSRPAVVHIGALFTFDSTIGKVAKIALEEAVKDVNANASVLPGTKLVLTEQNSNCSGFLGMVQALRFMETDVVAIIGPQSSVVAHIISHVANELQVPLLSFAATDPTLSNLQFPFFVRTTMSDLYQMAAVAEIVDYYGWKEVIAIFIDDDFGRNGVSALDDQLSARRCRISYKAGIRSGTGVDRGEITDLLVQVALMQSRVIVLHANPDSGFMVFNVAQYLGMTGNGYVWIATDWLSSVVDSTSLPSDTMSVLQGVLVLRQHTPDSDSKTAFLSRWNKFTGGSVGLHSYGLHAYDTVWLLAHAIDAFFNQGGIISFSNDSRIHDADESNLNLEAMSIFDNGTLLLNNILQSNFVGLTGPVKFESDKSLVRPAYDIINVVGTGIRQVGYWSNYSGLSIVPPETLYAKPPNRSSANQQLHAVIWPGETLSKPRGWVFPNNGKQLRIGVPIRFSYRDFVSPIQGTDMFKGFCIDIFTAALNLLPYAVPYRFVPFGDGRKNPNYDELVRLITTGYFDGAVGDIAIVTNRTKVVDFTQPYIESGLVVVAPFKKTNSGGWSFLRPFTPLMWIVTASFFFFIGIVVWILEHRINDEFRGPPRQQIITILWFSLSTLFFAHRENTMSTLGRVVVIIWLFVVLIINSSYTASLTSILTVQQLSSPISGIDSLKAGDEPIGYQVGSFAEHYLADDVGISKSRLVALGSPEEYAKALQLGPEKGGVAAIVDERPYVEIFLSTHCSFRIVGQEFTRSGWGFAFPRDSPLAIDLSTAILQLSENGELQRIHDKWLLGRACSTDDTEIDSDRLRFKSFWGLFLMCGIACIVALSIYFLQIVLQLRHSAPAQPAASNGSSVSRHFRRFISLIDEKKERSNNSGRKRVEAQRSSEEDGLGRQLKRLQTETSQTTTQLNFSVQKDQV 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1283g00063 934 FunFam Glutamate receptor 703 810 - -
Pral1283g00063 934 Gene3D - 146 419 - -
Pral1283g00063 934 Gene3D - 737 775 - -
Pral1283g00063 934 Gene3D - 776 806 - -
Pral1283g00063 934 SUPERFAMILY Periplasmic binding protein-like I 25 457 IPR028082 -
Pral1283g00063 934 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 44 60 - -
Pral1283g00063 934 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 317 329 - -
Pral1283g00063 934 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 104 132 - -
Pral1283g00063 934 SMART GluR_14 467 808 IPR001320 GO:0015276|GO:0016020
Pral1283g00063 934 PIRSF IGluLR_plant 1 933 IPR017103 -
Pral1283g00063 934 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 31 883 IPR015683 -
Pral1283g00063 934 Pfam Ligand-gated ion channel 807 839 IPR001320 GO:0015276|GO:0016020
Pral1283g00063 934 Pfam Bacterial extracellular solute-binding proteins, family 3 487 806 IPR001638 -
Pral1283g00063 934 MobiDBLite consensus disorder prediction 886 910 - -
Pral1283g00063 934 Gene3D - 49 394 - -
Pral1283g00063 934 Gene3D - 576 703 - -
Pral1283g00063 934 CDD PBP1_GABAb_receptor_plant 32 423 IPR044440 -
Pral1283g00063 934 CDD GluR_Plant 464 806 - -
Pral1283g00063 934 Gene3D - 461 575 - -
Pral1283g00063 934 PRINTS Metabotropic glutamate GPCR signature 166 183 IPR000337 GO:0004930|GO:0007186|GO:0016020
Pral1283g00063 934 PRINTS Metabotropic glutamate GPCR signature 131 150 IPR000337 GO:0004930|GO:0007186|GO:0016020
Pral1283g00063 934 PRINTS Metabotropic glutamate GPCR signature 150 166 IPR000337 GO:0004930|GO:0007186|GO:0016020
Pral1283g00063 934 PRINTS Metabotropic glutamate GPCR signature 99 125 IPR000337 GO:0004930|GO:0007186|GO:0016020
Pral1283g00063 934 SUPERFAMILY Periplasmic binding protein-like II 441 807 - -
Pral1283g00063 934 Pfam Receptor family ligand binding region 49 404 IPR001828 -
Pral1283g00063 934 FunFam Glutamate receptor 577 707 - -
Pral1283g00063 934 FunFam Glutamate receptor 146 302 - -
Pral1283g00063 934 FunFam Glutamate receptor 461 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1283g00063 Pral-Chr1283 391289 395490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1283g00063 1 898 Ion Channels AT1G42540 64.356 0.0 1241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1283g00063 K05387 - gmx:100777478 1434.85