Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1283g00051 ATGGCGTACCACCAGATCCAGGGTCATACGCCCACGCCTGGATCCAATTCAAGTTCTGGATTTCAATCAATAAGCTCCCCTTTTGGTGACACCACTTTTACCAAGGTATTTGTTGGAGGATTGGCGTGGGAGACCCAGAGCGAAACCATGCGCCGATACTTTGAGCAGTTTGGCGACATTCTTGAAGCTGTTGTAATCACTGATAGGAATACAGGCCGATCCAAAGGCTATGGTTTTGTGACTTTCCGGGATCCTGAGGCTGCTAGAAGAGCCTGTGCCGATCCAACTCCTGTCATTGATGGAAGGAGGGCCAATTGTAACTTGGCTTCACTTGGACGACCGTGGCCTCCTCCACCATTTGGACGGTTAAGGCCAGCTCCAGCTTACATTGGAAATTTGCCAACGTCCCGAGGTGCCTATGTTGGAGGTTTTGGCTATCAGCAACCACCTTCTTACAGCTATCAACAAGGATTGGTTTATCCTCATTATGGGTATACGACTTATGGACCTGAATTTGTATATCCACAGGGTTTGTACAACCCATATTTGGGCCAACAGTATCTTCAGATATATGGAGTGCCTGGTGCAGTGAATAATACTATTTATCCTTATGGGCAGTTAGGTCAAGCTATTCCCAGTAGTCATGGTTATGCAGGAATGCAGGGCTATCCTGTAACTGGTCATCACATTGTACCTTATGGTGGAACCAATGTTAATACCCTGACTACTTCACCTATGCCTACCATTCAAGTACCATATCCCAGTGGAATTGCTGCACCAATGCCAGGACAACCACAATTTATTGTCCCTGCGCCTTCTCAGTTTATGCAAGGCACTGGTCCTGACCAAGCAGCTGGGTGA 861 0.4739 MAYHQIQGHTPTPGSNSSSGFQSISSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDRNTGRSKGYGFVTFRDPEAARRACADPTPVIDGRRANCNLASLGRPWPPPPFGRLRPAPAYIGNLPTSRGAYVGGFGYQQPPSYSYQQGLVYPHYGYTTYGPEFVYPQGLYNPYLGQQYLQIYGVPGAVNNTIYPYGQLGQAIPSSHGYAGMQGYPVTGHHIVPYGGTNVNTLTTSPMPTIQVPYPSGIAAPMPGQPQFIVPAPSQFMQGTGPDQAAG 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1283g00051 286 SMART rrm1_1 35 107 IPR000504 GO:0003723
Pral1283g00051 286 Gene3D - 3 116 IPR012677 -
Pral1283g00051 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 92 IPR000504 GO:0003723
Pral1283g00051 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 111 IPR000504 GO:0003723
Pral1283g00051 286 SUPERFAMILY RNA-binding domain, RBD 33 136 IPR035979 GO:0003676
Pral1283g00051 286 MobiDBLite consensus disorder prediction 1 23 - -
Pral1283g00051 286 PANTHER BOULE-RELATED 15 245 - -
Pral1283g00051 286 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 28 114 - -
Pral1283g00051 286 CDD RRM_RBM24_RBM38_like 34 109 - -
Pral1283g00051 286 MobiDBLite consensus disorder prediction 8 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1283g00051 Pral-Chr1283 330754 335587 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1283g00051 10 172 C2H2 Transcription Factor Family AT2G19380 29.885 7.07e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1283g00051 - - pcin:129318420 471.085