Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1279g00005 ATGACAAGGGCTGTGCGCAGTAGGATACTCAAAGATGCGAATGGTGATATTAGCGATCATCTACGCAACCATATCCATTTAACAAATTGCATTCACTTGAAGAACCATATGCACAAAAACAGCCCCATTCTTGCTGATAGGTCGCTTATGAGGGAACTAGTTGTGTTGCAGAGATCGCGCTCTCTGAGAGACCCTTCAGCAAGTCCTTCTTCATGGCATTCTCCTTCTATAATTGAGGTGCTTTCCAAGAGGGTTGACAATGACGTGGTGCTTCAGGAGGGAAGAAGGTCTGTAGGAATTGAACGCCGGAAAGAAGGAAGGAGATTGTCTGGAACCTCACCACCTGTTGTTAATTTAGGTCCATCAAAAGTTGCTCCGGGTGAGGAGAGCCGGGGTAATGATGGAGTGTCAGCAAGTAGAGACCGCAGCAGCAGGAGTGGAATTGGGGACGGGCGGAAAGTTGGAAGAGAAGAGTCTGGTCGGAAGAGCGACAGGCCTGATTATATGGGTCCCAGCAAAGAGCAACTTCACAGTCAGCTTGGCAAAGATTTGACTGAAGATGTTGTTTCAAGGCATTCTGAATCTAAAGAGAGAAAGAGCAAACAAAGGGGGAAGCATGTTCAAGATGTTCAGTTCAAGACCCTTTCTGAGCAGCTGAACGATGTTCCACTGGACAGTGATGATTTGGCATCTTCAAACAATAATGTCCAAAGACGGTTTCCTAGGCAGCAGAAAATTATTGAGGCGCCCGAAGCCAGCACACGTGGTCATGGAAATGGAGTGAACAGAGGAAAAAGGCGTAAATTTCGGAGTGCAAGAAGAGCTCGGGCTTCTGCGGCATCTAAAGATGTCGGTGCTGAGAATGAACTGTCTGTTGCTTCGAACTCATTTGCTTATGGTTCAGCCCACCATAGATATCACATGGAAGAGCCAGATGAATATGGAGAGGAAAATGTCACCAGGGCACCCAAAAATGGGTGTGGCATTCCTTGGAATTGGTCTAGAATTCATCACAGAGGCAAAACATTCCTTGACAGGGCTGGACGAAGTTTCTCTTGTGGCTTATCTGACTCAAGACTAAAAAAAGGGGCATTGGATGCCAATGGAAGAAATATTTCTGATATGCCAGTGGCATCTGACCAATCAAGCTCATTTACCAGGTCTGATGGAGAGGCAATGCCGCTGCTAGTTGAGGCATCTGGATCTCAGGGAAGTACTGAGAATGCTTGTTGGGGCCATGACTATTCCGGAGAGCTTGGTATTTTTGCTGATAACTTATTGAAGCATGACATTGATTCTGACCTCGCTTCTGATGTTAGATCTGGGGATCAGCCTAAGATGAGAGTGAATCGCCATGGCAGGCATCAAAGCTTAACGCAAAAATATCTACCCCGAACCTTCAGAGATTTAGTTGGGCAGAATTTGGTGGCACAAGCTCTTTCAAATGCAGTCATGAGAAGAAAAATTGGATTTCTTTATGTGTTTTATGGACCCCATGGCACTGGAAAAACTTCATGTGCTCGGATATTTGCTAGAGCTTTAAATTGTCATTCTTCTGAACACCCAAAACCATGTGGCTTTTGCAATTCTTGTGTAGCACATGATATGGGCAAGAGCAGAAGTATAAGGGAAGTTGGTCCAGTCAGTAATTTTGACTTTGAGAGCATCATGGATCTACTTGACAATATGATTGTTTCCCAGCTTGCATCACAATACAGAGTGTTTATTTTTGATGATTGTGATACTCTGTCAGCTGAATGCTGGAGTGCCATATCGAAGGTCATTGATCGAGCTCCTAGACGTGTGGTTTTTATTCTTGTTAGTTCGTCTCTTGATGGATTGCCTCATATAATCATATCCAGGTGCCAGAAATTTTTCTTCCCAAAGCTGAAGGATTCAGACATTATGTATACATTACAGAGGATTGCAACTAAAGAGGGTCTAGAAATTGATAGGGATGCCTTGAAACTTATTGTATCAAGATCAGATGGATCGTTAAGAGATGCTGAGATGACCCTTGAACAACTTAGTTTGCTTGGCCAGAGAATATCAGTTCCTCTTGTGCAGGAATTGGTTGGGCTTATCTCTGATGAGAAATTGGTCGATCTGCTTGATTTGGCACTCTCCGCAGACACAGTCAACACTGTAAAGAATCTGAGGGTGATAATGGAAACTGGTGTTGAGCCGCTTGCCTTGATGTCTCAGCTTGCCACTGTAATTACTGACATACTTGCTGGGACCTATGATTTCACAAGAGATAGGAGGAGAAGGAAGTTTTTCCGGAGAAATCCATTATCGAAAGAAGATATGGAAAAGCTACGCCAAGCTTTGAAAACCTTATCTGAGGCTGAGAAGCAGTTGAGGATGTCCAATGACAAACTAACCTGGCTGACAGCTGCGTTGCTTCAACTTGCTCCTGACCAGCAATATATGCTGCCAACATCATCTGATAATAGTTTCAATCATAGTCCCTTGCCCCTAAATAAGGTAGATGGGAGAGAAGCAGCCCGGAGAACAAGTACTAATGTTGAAATTCCTCGCAAAGAGAGACGTTTATCAATGGATTCTAGAATAGAGAATGTCCATGCTGGTAGCTCTGCTGATGGCGTGGCAAAGAGTCTTAGTTCAGATAATAAAAGACTTGCTGTGGCTGGTTTTGTGCCTCAACAGACATCTTCACATGTTACCGATGTGATTAGAATGAATGACAGACAGACTCTGGGTAAAAATCGGAAAGGAACTGAAGAGATATGGTTAGAGGTGCTTGACAGAATTCAGGTTAATGGTGTAAAAGAGTTTTTATATAGAGAAGGGAAGCTGGCCTCTGTTAGTTTTGGTGCTGCTCCAACTGTCCAGTTAATGACCAGTTCCCAACAGACGAAATCTACTACTGAGAAGTTCAGGGGGCATATTTTACAGGCATTTGAATCTGTCCTTGGATGTTCAGTAACGTTAGAAATTAGATGTGAATCAAGCAGAGATGCAGGATCAGGGTCTCAACTCCCTCTTATACTGCCTTCCACTAAAGATAGTTCTGTAGAAAAGAAAATGAGTGAAATTGTAGAAGAAGAAACTTCTCTGAAGGACCCTAAGAATAACGAGAAGCAAGCTGATGTTAACAAAAAGCCAATTGTGACTTCACACTTGGAAAGAAGGAGGCTCAGGGAACAAGGTCAGAGCCGAAGCATTGTGAAAAGTAAGGTATCTCTTGCTCATGTAATCCAGCAGGCAGAAGGACATACACAGCGCAGTGGGTGGTCAAAACGCAAAGCAGTTTCCATTGCTGAAAAGCTTGAACAAGAGAATCTGAGACTAGAGCCAAGATCAAGGAGCTTGCTATGCTGGAAAGCATCACGAGTATCCCGGCGGAAGCTTTCGCGTTTGAAAGTTAGAACCAGAAAATCTCATGCGTTGTTGAATCTGGTCTCATGTGGAAAATGTCTCACTTCTAAATCTCCAAGGTCAAGCCTCTTTCTTTATTTGTTTAGTCTAATAAAGAGCTCGAGATTGTATATCTGA 3519 0.4354 MTRAVRSRILKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSLMRELVVLQRSRSLRDPSASPSSWHSPSIIEVLSKRVDNDVVLQEGRRSVGIERRKEGRRLSGTSPPVVNLGPSKVAPGEESRGNDGVSASRDRSSRSGIGDGRKVGREESGRKSDRPDYMGPSKEQLHSQLGKDLTEDVVSRHSESKERKSKQRGKHVQDVQFKTLSEQLNDVPLDSDDLASSNNNVQRRFPRQQKIIEAPEASTRGHGNGVNRGKRRKFRSARRARASAASKDVGAENELSVASNSFAYGSAHHRYHMEEPDEYGEENVTRAPKNGCGIPWNWSRIHHRGKTFLDRAGRSFSCGLSDSRLKKGALDANGRNISDMPVASDQSSSFTRSDGEAMPLLVEASGSQGSTENACWGHDYSGELGIFADNLLKHDIDSDLASDVRSGDQPKMRVNRHGRHQSLTQKYLPRTFRDLVGQNLVAQALSNAVMRRKIGFLYVFYGPHGTGKTSCARIFARALNCHSSEHPKPCGFCNSCVAHDMGKSRSIREVGPVSNFDFESIMDLLDNMIVSQLASQYRVFIFDDCDTLSAECWSAISKVIDRAPRRVVFILVSSSLDGLPHIIISRCQKFFFPKLKDSDIMYTLQRIATKEGLEIDRDALKLIVSRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFTRDRRRRKFFRRNPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYMLPTSSDNSFNHSPLPLNKVDGREAARRTSTNVEIPRKERRLSMDSRIENVHAGSSADGVAKSLSSDNKRLAVAGFVPQQTSSHVTDVIRMNDRQTLGKNRKGTEEIWLEVLDRIQVNGVKEFLYREGKLASVSFGAAPTVQLMTSSQQTKSTTEKFRGHILQAFESVLGCSVTLEIRCESSRDAGSGSQLPLILPSTKDSSVEKKMSEIVEEETSLKDPKNNEKQADVNKKPIVTSHLERRRLREQGQSRSIVKSKVSLAHVIQQAEGHTQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRVSRRKLSRLKVRTRKSHALLNLVSCGKCLTSKSPRSSLFLYLFSLIKSSRLYI 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1279g00005 1172 MobiDBLite consensus disorder prediction 260 275 - -
Pral1279g00005 1172 Pfam DNA polymerase III, delta subunit 473 630 - -
Pral1279g00005 1172 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 677 IPR027417 -
Pral1279g00005 1172 FunFam DNA polymerase III subunit gamma/tau 451 629 - -
Pral1279g00005 1172 SUPERFAMILY post-AAA+ oligomerization domain-like 701 804 IPR008921 GO:0003677|GO:0006260
Pral1279g00005 1172 CDD HLD_clamp_pol_III_gamma_tau 630 693 IPR045085 -
Pral1279g00005 1172 SMART AAA_5 489 630 IPR003593 GO:0016887
Pral1279g00005 1172 MobiDBLite consensus disorder prediction 101 210 - -
Pral1279g00005 1172 MobiDBLite consensus disorder prediction 145 171 - -
Pral1279g00005 1172 FunFam DNA polymerase III subunit gamma/tau 631 693 - -
Pral1279g00005 1172 MobiDBLite consensus disorder prediction 249 283 - -
Pral1279g00005 1172 Gene3D - 447 627 IPR027417 -
Pral1279g00005 1172 Gene3D - 631 693 - -
Pral1279g00005 1172 Coils Coil 766 793 - -
Pral1279g00005 1172 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 459 834 - -
Pral1279g00005 1172 MobiDBLite consensus disorder prediction 994 1017 - -
Pral1279g00005 1172 Pfam DNA polymerase III subunits gamma and tau domain III 686 805 IPR022754 GO:0003887
Pral1279g00005 1172 MobiDBLite consensus disorder prediction 179 210 - -
Pral1279g00005 1172 NCBIfam DNA polymerase III subunit gamma/tau 456 804 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1279g00005 Pral-Chr1279 16304 24001 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1279g00005 456 742 Core DNA Replication Machinery Family AT1G21690 22.569 5.41e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1279g00005 - - gmx:100793832 1727.61