Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1277g00002 ATGGCTGAACCTCGTCGTAAGCGCCCCAAAATTGCCAGGGGAGAAGATGATTTTATGCCTGGAAGCATTATCGAGATCGAGCTTTTTAAGTTTATGACCTTTGACTACCTAAAATGTAAACCTGGTCCTCGTCTGAATCTTGTTATTGGACCCAATGGTTCTGGGAAGAGTTCTCTTGTTTGTGCCATTGCACTTGGTCTGGGGGGTGAGCCTCAGCTGCTAGGACGAGCAACAAGTATTGGATCATATGTGAAGCGGGGAGAAGAATCAGGTTGTATTAAGATTACATTGAGAGGGGATAGTAAAGATAAGCATATCACTGTTATTCGGAAAATAACTACTAACAACAAGTCTGAATGGTTGTTCAATGGAAAAGTAGTGCCCAAAAAGGATGTGATGGAAGTCATTCAACGGTTTAACATCCAAGTTAATAATTTGACCCAATTTTTACCCCAGGACAGGGTCTGTGAATTTGCTAAATTAACTCCTGTGCAACTTCTGGAGGAGACTGAAAAGGCTACTGGTGATCCCCAACTTCCAATCATTCACCGTTCTCTTGTTGATAAAAGCCGTGCATTGAAGCAAATTGAGCTGACAGTGACGAAAAATGAAGAAACTTTGAAACAGCTAAAGGACCTTAATGCTGAACTTGAGAAGGATGTTGAACGTGTCCGTCAAAGGGATGAACTACTTAAAAAGGTTTTATCTTGGTTTGAAAAGAAAGTGCCATGGCTTAGATATGATATGAAGAAGGCTGAATACTTGGAAGCTAAAGAACGTGAAAATGATGCTAAAAAGAAGATGGAGGAAGCTGCAAAGATTTTAAATGATCTGAAAGAACCTATCGAGAAACAGAAAAAGAACAAGGCAGCAATGGATGCAACATGTAAAAAGGTTGCCAGCCTTATAAATGGCAATGCCATGAAGCGAATGGAACTTCTGGAGAAAGAAAACCATCTGGGTGTGGAATTACAAGGAAAATACAATGAAATGGAAGACTTGAGGAGGCAGGAAGAAACTTGTCGGCAAAGATTTTTAAAGGCTAAGGAGGAACTTGCTGCTGCTGAACGTGAACTGGAGAATCTGCCTCATTATGAACCTCCAAAGGAAGAGATTGAAAGACTAAAAGATGAAATTTTGAACTTGCAAAATTCTGCATCTCAAAAGAGGCTAGAGAAGTCAGAAACAGACAAATTTTTATATCAGAAAAAGTCATCATTGGCACAGTGTATAGACAGGTTGAGGGAGATGGATAGTAAAAATACTAAGTGTTTGCATGCGTTACGAGATTCAGGGGCAGAGAAAGTAATGGAAGCTTATAAATGGGTGCAAGATAATCGCCATTTATTCAATAAGGAAGTTTATGGTCCTGTACTGCTGGAGGTTAATGTCGCAAAGCAGACTCATGCTGCCTTCCTGGAGGGTCATGTTCCTTATTACATCTGGAGGTCTTTCATTACTCAAGATTCTGGTGATCGGGACCTTTTGGTAAAAAGTCTGAGCTCCTTTGATGTTCCAGTATTAAATTATACTGGTGATGATGGTAGTCAGAGAGAGCCATTTCAAATTTCTGAAGATATGCGTACTCTTGGTATCTACTCACGTCTTGATGAAGTTTTTGATGCTCCCACAGCTGTTAAGGAGGTTTTGATTGGACAGTTTGGTCTGGATCATTCATATATTGGAACAAGAGAAACTGATCAGAAGGCAGATTGGGTCCAAAAATTGGGCATTTTTGACTTTTGGACTCCAGATAATCACTATCGTTGGTCTAAATCTAGATATGGGAATCATGTATCAGGAGTTGTTGAACAAGTACAACGTTCGAGACTTCTTTCATACAATATAGACGCTAGAGAAATCGAGAAGCTGAGGTGTCACAGAATGGACCTTGAAGAATCTATAGAAACCTTGGAAGCAACTTCTAAAGGATTACAAGATGAGGAGAGACGCCTAAGCAATGAAGCAGCTAATCTCCGCAGACAGCGGGATGAAATAAACACTACTGTGCTTAAAGAGAAGGAAAAGCGCCGGGATATCATGCGCACTATTGAACTGAGGAAAAGGAAATTAGAGTCAGTGGCGGTGGAGGGTGATATGGATATGGTTATTGCTAAGCTGACTGATCAAGCAAGAAATTGTAATATTCAGCGATTCCATAATGCAATCAAAATTAAGAACCTACTTCTTGAGGCAATTGGTTATAGACGGAGTTATGCTGAAAAACATTTGGCTACTCTTGACTTTGATGCTAAGATTAGGGAGTCGGAGGCCAGTTTGAAGCAGCACGAGAAGCTTGGTTTGCAAGCATCCTTACACTTTGAATCCTGCAAGAAGGAGACTGAGAATTGTCGACAGCTGCTTTCAGAATGTTTGAGGCGTGCTGAATCAATTGCTCCCATCACTCCAGATCTTGAGAAGGAATTTCTTGAGATGCCCACTACTATTGAGGATTTGGAAGCTGCAATCCAAGACACCACTTCCCAAGCCAATTCTATACTTTTTGTCAATCATAATGTGTTGGAACAATATGAGAACCGTGAACGTCAGATAGGGGCTTTAGCTGCAAAACTTGAAGAAGATAAAAAGGAAGTAAGTAGGTGTCTAGCTGAAGTAGACACCCTAAAGGGGACATGGCTTCCAACGTTGAGGAACCTTGTGGCCCAGATAAATGAAACCTTCAGTCGTAATTTCGAGGAGATGGCTGTTGCAGGAGAAGTTTCACTTGATGAGCGTGATGTGGACTTTGATCAGTTTGGGATACTCATAAAAGTGAAGTTCAGACCAACAGGACAGCTTCAAGTTCTGAGTGCCCACCATCAGTCTGGAGGGGAGCGATCAGTTTCTACTATTCTTTATCTTGTTTCTCTTCAAGATCTTACCAACTGCCCATTTAGAGTGGTTGATGAGATTAATCAAGGCATGGACCCAATAAATGAAAGGAAAATGTTCCAGCAACTAGTGAGAGCTGCCAGCCAGCCAAATACACCACAATGTTTTTTGCTTACCCCAAAGTTGCTACCGGATCTGGAATACAGCGAAGTGTGCAGTATTTTAAATGTAATGAATGGGCCTTGGATTGAGAAAGTCTCGGAAGTTTGGGGTGAAGGTGATCGATGGGGGAAAATTGCAGGGTTGATGTTAGAGAATCAAAGCTGA 3159 0.4118 MAEPRRKRPKIARGEDDFMPGSIIEIELFKFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLGGEPQLLGRATSIGSYVKRGEESGCIKITLRGDSKDKHITVIRKITTNNKSEWLFNGKVVPKKDVMEVIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKATGDPQLPIIHRSLVDKSRALKQIELTVTKNEETLKQLKDLNAELEKDVERVRQRDELLKKVLSWFEKKVPWLRYDMKKAEYLEAKERENDAKKKMEEAAKILNDLKEPIEKQKKNKAAMDATCKKVASLINGNAMKRMELLEKENHLGVELQGKYNEMEDLRRQEETCRQRFLKAKEELAAAERELENLPHYEPPKEEIERLKDEILNLQNSASQKRLEKSETDKFLYQKKSSLAQCIDRLREMDSKNTKCLHALRDSGAEKVMEAYKWVQDNRHLFNKEVYGPVLLEVNVAKQTHAAFLEGHVPYYIWRSFITQDSGDRDLLVKSLSSFDVPVLNYTGDDGSQREPFQISEDMRTLGIYSRLDEVFDAPTAVKEVLIGQFGLDHSYIGTRETDQKADWVQKLGIFDFWTPDNHYRWSKSRYGNHVSGVVEQVQRSRLLSYNIDAREIEKLRCHRMDLEESIETLEATSKGLQDEERRLSNEAANLRRQRDEINTTVLKEKEKRRDIMRTIELRKRKLESVAVEGDMDMVIAKLTDQARNCNIQRFHNAIKIKNLLLEAIGYRRSYAEKHLATLDFDAKIRESEASLKQHEKLGLQASLHFESCKKETENCRQLLSECLRRAESIAPITPDLEKEFLEMPTTIEDLEAAIQDTTSQANSILFVNHNVLEQYENRERQIGALAAKLEEDKKEVSRCLAEVDTLKGTWLPTLRNLVAQINETFSRNFEEMAVAGEVSLDERDVDFDQFGILIKVKFRPTGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEVCSILNVMNGPWIEKVSEVWGEGDRWGKIAGLMLENQS 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1277g00002 1052 Coils Coil 621 676 - -
Pral1277g00002 1052 Pfam RecF/RecN/SMC N terminal domain 24 992 IPR003395 -
Pral1277g00002 1052 Gene3D - 849 1011 IPR027417 -
Pral1277g00002 1052 Coils Coil 251 278 - -
Pral1277g00002 1052 Coils Coil 331 358 - -
Pral1277g00002 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 4 1046 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Pral1277g00002 1052 Coils Coil 841 864 - -
Pral1277g00002 1052 Coils Coil 193 234 - -
Pral1277g00002 1052 Gene3D - 22 219 IPR027417 -
Pral1277g00002 1052 FunFam Structural maintenance of chromosomes 5 848 1019 - -
Pral1277g00002 1052 Coils Coil 372 392 - -
Pral1277g00002 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 995 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1277g00002 Pral-Chr1277 38178 56024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1277g00002 1 1043 Structural Maintenance of Chromosomes family AT5G15920 64.334 0.0 1375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1277g00002 K22803 - qsa:O6P43_001392 1544.64