Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1273g00003 ATGTCTAATCGTTTACCCCAAGAAATTGTGGAGGAAATCCTTCACAGACTACCCGTCAAGTCTCTTGTGAAATTCATCACGGTTTGCAGAGCTTGGAATTCCCTCATCACAAATCGAACTTTCATATCTGATCATCTCAACCGTACAATCGAAGCTTCCAATTGCGGGGGCTCCCTCTTTTTTCAATTCTGTCTTAAAGAATACAAAGGGCAGATTCATCTTCATCAAGAGGAGTTTTACTCATTGTACTCAGTTAATCAGCAAACCAATCACTTCTCTGTAGAGAGATTCCCACTCTCTCATCTGTTTCGGCGGGATCGTCTTGATATATTTGCTGGCACATGCAATGGCCTCGTCTGTGCTGCTGACTATTCATCCTTCCATTCCGCAACTATCCTTATTTGGAATCCCTTGCTTCGAAAATATTTGGTGCTTCCCAAACCAATCATGACCTACAAAAAACGCAAACGTCAACTTTATGACGACTATCACCTACATTTTGGGTTTGGTTTTGATTCCAAGAATAATGATTACAAGGTCATTAGACTCATGATTCTTTGCGCTGAACAAGATACTCCTCACGTTGAGGTGTACTCTCTTGTTTCTCGTTCTTGGAGAATTATTGATGTTAGGGTTCCTCCGTTTTTCTTTTGTTATTTAAACGATTGGTTAGCCCCAATAGCTGTGAATGGGGCGGTACATTGGGTTGTTGGTCGTCGTGGATTTGATCGTTCACGGTACAAATTTATTTTGTCATTTGATGTAACTGAAGAGACATTTGGAGAATTAATGTTACCTCAACAGTCGAGGGAAGTCGCGTCAACATTACTTGCTGTGGAAGGAGGCCATTCGCTTGCCGTGGTGAATCATTTTATGAAAAGGAACCGACGGGTGTTCAGTATTTGGGTGATGAAAAAATATGGTGTTATCGAGTCATGGACTGAAGTATTCCAATGTGATTCAAAAAGTTATGGGGGCGTATTAGGCATATTAGCTCTAACTGCTGGTGGAAAAGTGGTAGTGAAACTTGCAAGTGAAGTTATTACTTTAATTGATCCAATCAATGGATCGTTGGAGCCTGTGGGACGTCAGGGATATTCTGAAGCTTATGTTGGATCTTATGTTGAGAGTTTGTTCCTAATAAACAAAGAACCTGATGTTTTGTCTTTCTAA 1173 0.4066 MSNRLPQEIVEEILHRLPVKSLVKFITVCRAWNSLITNRTFISDHLNRTIEASNCGGSLFFQFCLKEYKGQIHLHQEEFYSLYSVNQQTNHFSVERFPLSHLFRRDRLDIFAGTCNGLVCAADYSSFHSATILIWNPLLRKYLVLPKPIMTYKKRKRQLYDDYHLHFGFGFDSKNNDYKVIRLMILCAEQDTPHVEVYSLVSRSWRIIDVRVPPFFFCYLNDWLAPIAVNGAVHWVVGRRGFDRSRYKFILSFDVTEETFGELMLPQQSREVASTLLAVEGGHSLAVVNHFMKRNRRVFSIWVMKKYGVIESWTEVFQCDSKSYGGVLGILALTAGGKVVVKLASEVITLIDPINGSLEPVGRQGYSEAYVGSYVESLFLINKEPDVLSF 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1273g00003 390 Pfam F-box domain 4 38 IPR001810 GO:0005515
Pral1273g00003 390 ProSiteProfiles F-box domain profile. 1 50 IPR001810 GO:0005515
Pral1273g00003 390 CDD F-box_AtFBW1-like 5 41 - -
Pral1273g00003 390 Gene3D - 3 41 - -
Pral1273g00003 390 NCBIfam F-box protein interaction domain 114 341 IPR017451 -
Pral1273g00003 390 Pfam F-box associated 227 324 IPR006527 -
Pral1273g00003 390 SUPERFAMILY F-box domain 3 65 IPR036047 GO:0005515
Pral1273g00003 390 SMART fbox_2 5 45 IPR001810 GO:0005515
Pral1273g00003 390 PANTHER BNACNNG10540D PROTEIN 3 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1273g00003 Pral-Chr1273 137699 138871 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1273g00003 159 320 Carbohydrate Esterase AT1G25141 27.879 3.84e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1273g00003 - - pcin:129288916 384.415