Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1272g00006 ATGGTTCTCCAGAACGATATCGATTTACTGAATCCTCCGGCCGAGATCGAAAAGAGGAAGCACAAGCTTAAACGTCTCGTTCAGTCTCCGAATTCATTCTTCATGGACGTCAAATGTCAAGGTTGCTTCAATATAACCACCGTATTTAGCCACTCGCAAACAGTTGTTGTCTGTGGAAATTGCCAGACCGTATTGTGCCAGCCAACGGGTGGCCGAGCTCGGTTAACAGAAGGATGTTCTTTCAGGAAGAAGGAGATTAGTGATCAGGCACATCATCTAATTCCAGTGCCTTTGTGGGTTGGCTTCATCTCTTGA 315 0.4603 MVLQNDIDLLNPPAEIEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKEISDQAHHLIPVPLWVGFIS 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1272g00006 104 PANTHER 40S RIBOSOMAL PROTEIN S27 1 86 IPR000592 GO:0003735|GO:0005840|GO:0006412
Pral1272g00006 104 Hamap 30S ribosomal protein S27e [rps27e]. 24 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Pral1272g00006 104 Gene3D - 5 85 IPR023407 -
Pral1272g00006 104 SUPERFAMILY Zn-binding ribosomal proteins 30 84 IPR011332 GO:0006412
Pral1272g00006 104 FunFam 40S ribosomal protein S27 1 86 - -
Pral1272g00006 104 Pfam Ribosomal protein S27 30 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Pral1272g00006 104 ProSitePatterns Ribosomal protein S27e signature. 38 70 IPR000592 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1272g00006 Pral-Chr1272 29079 30165 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1272g00006 1 84 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 94.048 1.58e-57 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1272g00006 K02978 - csav:115708260 178.718