Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1271g00003 ATGGCCCCTGATGCTGCTTCGTCCTCTGCCTCTGCTAAATTTTCCATCAAGAAATATGATGTTTTCATCAGCTTTAGGGGTGAAGACACTCGTGCCAACTTCACGAGCCATCTTTATGAAGCGTTCTGCAGGAAGAAAATAAGAACATACATAGACTCCAAACTTCCCAAAGGAGATGAGATCTCAGCTGCACTTACGCAAGCAATCAAGGATTCCTACGCCTCTGTTGTGGTATTCTCAGAAAATTATGCTTCTTCAAGATGGTGCTTGGATGAACTCACCCACATACTTCATTGCAAAAGGGTTCAAGAACAGATTGTTATTCCAGTATTTTATAAAGTTGAGCCCTCTCATGTGAGAAATCAGACTGGCCTTTACAAGCAAGCATTTGAGACCTATGAGAGAGACGTCAAGGTCAACCAACACAAGGTGCAAATGTGGAAGCATGCGCTCAATGAAGCTGCAAACTTAGCTGGTTATGACTCACACACTTTCAGGGATGAATCTGAACTGATTCAAAAGACTGTCAAAGACATATTGCAGAAGTTGAGTCACAAATATCCACCTGCTGATTTGAAAGCACTTGTCGGTATTGATGAAAAGTGCAGGGAGATTGAATTATTGTTAAGAGATTTTGAAACCATTGGAATTTGGGGCATGGGGGGTATTGGCAAATCAACCGTTGCCAAAACTATATTTGTCAAATACTCTTCCCATTATGAAGGCTCTTGCTTCTTGGAAAATGTAAGAGAAAAGTCTGAAAATGGACTTGCTGAATTACGTTATAAGTTTATCTCCTGTTTATTAAAGGAAGAAGATACTTGTACTGATCCTTTAACAACTTTTGTTCTATCTAGACTTAGTCGTATGAAAGTTTTTGTTGTTCTTGACGATATCAGTACTGTGGAGCAATTAGAATATTTGGTGGGAGAACCATTTTGCTTTGGGCTGGGAAGTAAAATTCTCATCACAACTAGGGACAAGCATGTGCTTAGCAAAGGAGTTGATGAAATATATAAGGTTAAGGAATTGGACTTCCACCAATCCCTTAAACTTTTCAGCTTGAATGCCCTCAACACTAGCCTGCCGATAATGGGATATGAAGAACTAACAAAAAGGGCAGTTGCTTATGCAAAAGGAATTCCATTGGCTTTAAAAGTTTTGGGTTCATATCTCCGTGGCAAAAGTGAGGTTGAATGGAATAGTGCATTGAGAAAACTTGAGAAGACTCCCCATGAAAACATTCAAAGAGTGTTGAGATTGAGTTATGATGGACTGAATCATGAAGAAAAGAACATATTTCTAGAGATTGCATGCTTTTTGAAGGGAATGTTGAAAGAACATGTGATCAGCCTATTGGATTGCTACAACTTCTATGGAGCTATTGGCATAAGAACACTTCATGATAAGGCTCTCATAAATGCAAATGATCACATGCCTGTAGAGATGCATGATTTGATACAAGAAATGGGGTGGGAAATTGTTCGTGAAGAATCTATCAATGAACCCGGAAGACGGAGTCGATTATGGGATTGTGAAGAAATCTATGATGTTTTGGCTAATAACAAGGGGACTGATAAACTTGAAGGCATAATGTTAGATGTGTCTCGAATCAAAGATATACATTTGAACGCCGACACTTTCAAAAGGATGTCTAATCTGCGATTTCTTAAATTTTATTCTGATTTAAACCATCGCTCAAGTCATGTATATTTACCAAAAGTTCTTGAGTTTTTTCCTAGCAAAATAAAGTATCTAGAGTGGTATGGATACCCACTTAAATCTCTGCCACCAACTTTTCGTCCTGAAAATTTGGTTGAGCTTCACATGCCAAATAGCCACGTTCAAAAGCTTTGGAATGGAATTCAGGATCTCGTGAATTTAGAAGAGATAAACCTTAGCGGATGCAAACGGTTGAAGGAGCTGCCAAATTTCTCTAAAGCCTTAAATCTGAAAGTAGTATCTCTTGTTGATTGTGAAAGTTTGCAATATGTTCATTCTTCTATTTTGTCTCTCCACTCGCTTGTTGAATTGGACTTATGCCGGTGCAAGAGACTGAGGAAACTGAAAACTAAGTTTCATTTAAAATCTCTACAATACATTCGAGTGGATGAGTGCATCAGTCTCAAGGAATTTTCAGTGTCATCAGAAAAAATAAAGGAGTTGAATCTGTGTCACACAGGAATCGAAAATTTGCACTCGTCCATAGGGCATTCAAGTAATCTGGAAGTGCTGGATCTGTTTGGCTTAAGACTGAAGAAAATTCCAAAGCAGTTATCGTGCTTGAGAACATTGACAATGCTCAGGCTTCCTAATTGTGAACTGCTTGATAATTCGATGCTACATATGTTATTTGGGGGCATGTTGTCTCTAACTGTAGTATATTTGACAGATTGTAGTCACATAACTGAACTTCCCAACAACACAGAACATCTTTTAAGGTTGGAATGTCTCTTCTTATCGAACTGCAGGAAGCTTCGTTCTTTACCAAAACTTCCACCATCCATTGCAACCTTAGATGCCTACAACTGCATGTCATTAGAGATAGTGTCAACCTTTAGACCACTGCACAGGAGTGAAAAATACTTCTCATTTATGAATTGCGTGAAACTGAATGAACAATCACTTCATAGTATCATAGAAGACGCCTATTCTATAATCAATGCAGCTGCTTGCAGGTTTCAACAAGAAAGAAAGGCTAAAGGTGCTCGTAGTTTGATTTGCTTTCATGGAAGTTTAGTACCTGAGTGGTTCAGATATCGAACAGAAAAAGGCTCCGTCATAATTGAAGTCCTTTATAATTCAGACTTGTTGGGATTTTCTCTCTGCGTTGTTCTTCAGTTTCACTCAGAGAAATCATGTTATGTTGCCCTAAACTGTGCGTGCTACTTGGGAGGTTTTAATGTGGCAAATTTACCGTACAATAATCTGTTTCTTCCAAATATGAACTCTGATCATGTGTACATATGGAATAATGAGTTTGGTTCTGGTGAGATATTGAAGGCGATTGAAAGACGAGGAAATGAAGAGTCACTCACTGACATAAAGCTTTGCTTTGAATTCAGTGTAGAACCTCGTTTTGGGTACGAGGTTGGTAACATCAACGAGGTAGTTGGTATCAAAGAATGTGGGGTATGTCCATTATATGTCTCAGAATGTCAGAAATTCTCTCCACAAATGGAAATGGTGAAGAATAAGAAGAGGCCTCGTGATGTTGATGAACAACAGCCACTTATTCAGTTGAAGAAGCTCAAGATTGACTATGATTCCCATGCCGACACATGTCATGATATTGATGAATTGAAGGCTCTTTTCATGGCAATTAACATCAGCTGA 3336 0.3867 MAPDAASSSASAKFSIKKYDVFISFRGEDTRANFTSHLYEAFCRKKIRTYIDSKLPKGDEISAALTQAIKDSYASVVVFSENYASSRWCLDELTHILHCKRVQEQIVIPVFYKVEPSHVRNQTGLYKQAFETYERDVKVNQHKVQMWKHALNEAANLAGYDSHTFRDESELIQKTVKDILQKLSHKYPPADLKALVGIDEKCREIELLLRDFETIGIWGMGGIGKSTVAKTIFVKYSSHYEGSCFLENVREKSENGLAELRYKFISCLLKEEDTCTDPLTTFVLSRLSRMKVFVVLDDISTVEQLEYLVGEPFCFGLGSKILITTRDKHVLSKGVDEIYKVKELDFHQSLKLFSLNALNTSLPIMGYEELTKRAVAYAKGIPLALKVLGSYLRGKSEVEWNSALRKLEKTPHENIQRVLRLSYDGLNHEEKNIFLEIACFLKGMLKEHVISLLDCYNFYGAIGIRTLHDKALINANDHMPVEMHDLIQEMGWEIVREESINEPGRRSRLWDCEEIYDVLANNKGTDKLEGIMLDVSRIKDIHLNADTFKRMSNLRFLKFYSDLNHRSSHVYLPKVLEFFPSKIKYLEWYGYPLKSLPPTFRPENLVELHMPNSHVQKLWNGIQDLVNLEEINLSGCKRLKELPNFSKALNLKVVSLVDCESLQYVHSSILSLHSLVELDLCRCKRLRKLKTKFHLKSLQYIRVDECISLKEFSVSSEKIKELNLCHTGIENLHSSIGHSSNLEVLDLFGLRLKKIPKQLSCLRTLTMLRLPNCELLDNSMLHMLFGGMLSLTVVYLTDCSHITELPNNTEHLLRLECLFLSNCRKLRSLPKLPPSIATLDAYNCMSLEIVSTFRPLHRSEKYFSFMNCVKLNEQSLHSIIEDAYSIINAAACRFQQERKAKGARSLICFHGSLVPEWFRYRTEKGSVIIEVLYNSDLLGFSLCVVLQFHSEKSCYVALNCACYLGGFNVANLPYNNLFLPNMNSDHVYIWNNEFGSGEILKAIERRGNEESLTDIKLCFEFSVEPRFGYEVGNINEVVGIKECGVCPLYVSECQKFSPQMEMVKNKKRPRDVDEQQPLIQLKKLKIDYDSHADTCHDIDELKALFMAINIS 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1271g00003 1111 Gene3D - 16 181 IPR035897 -
Pral1271g00003 1111 SMART till_3 18 157 IPR000157 GO:0007165
Pral1271g00003 1111 FunFam Disease resistance protein (TIR-NBS-LRR class) 15 185 - -
Pral1271g00003 1111 Pfam TIR domain 18 197 IPR000157 GO:0007165
Pral1271g00003 1111 Gene3D - 344 427 IPR042197 -
Pral1271g00003 1111 PRINTS Disease resistance protein signature 378 392 - -
Pral1271g00003 1111 PRINTS Disease resistance protein signature 670 686 - -
Pral1271g00003 1111 PRINTS Disease resistance protein signature 214 229 - -
Pral1271g00003 1111 PRINTS Disease resistance protein signature 286 300 - -
Pral1271g00003 1111 ProSiteProfiles TIR domain profile. 17 183 IPR000157 GO:0007165
Pral1271g00003 1111 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 160 IPR035897 -
Pral1271g00003 1111 Pfam Leucine Rich Repeat 604 623 IPR011713 -
Pral1271g00003 1111 SUPERFAMILY L domain-like 483 872 - -
Pral1271g00003 1111 Gene3D Ribonuclease Inhibitor 519 692 IPR032675 -
Pral1271g00003 1111 Gene3D Ribonuclease Inhibitor 693 847 IPR032675 -
Pral1271g00003 1111 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 713 IPR044974 GO:0006952
Pral1271g00003 1111 Pfam C-JID domain 909 1052 IPR045344 -
Pral1271g00003 1111 Gene3D - 182 341 IPR027417 -
Pral1271g00003 1111 Pfam NB-ARC domain 210 420 IPR002182 GO:0043531
Pral1271g00003 1111 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 435 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1271g00003 Pral-Chr1271 2037 7508 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1271g00003 15 852 WRKY Transcription Factor Family AT4G12020 33.643 5.10e-112 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1271g00003 - - pcin:129288061 1835.08