Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1254g00004 ATGGGTAGGCCACCGTGTTGCGAGGAGACTGGTGTGAAGAAAGGGCCTTGGATGCCCGAAGAAGATGAGAAGCTTTTCAATTGTATCAGCAAACATGGCAGCGGAAATTGGAAAACAGTTCCAAAGCAAGCGGGCCTTAATAGATGCGGCAAAAGCTGCAGGCTAAGATGGACCAATTATCTCAGGCCTGATATCAAGAGAGGCAAATTCACTGAAGAAGAGGAGAAATTGATCATCAAACTTCACTCTGTTCTTGGAAACAAGTGGTCGAAGATTGCAACGCATCTTCCAGGGAGGACTGACAACGAGATTAAGAATCTCTGGAACACCAACTTAAGGAAGAAGCTTCTCCAGATGGGTATTGATCCAGAAACTCACAAGCCAAGAACTGACTTGAAGCATCTCTTGAACCTCTCGCAATTTCTTGGCGTGGCTAATAATAACTTGACGAGCCATTGGGGCCATGCGGGTCTGGGTTTACAGCAACCAGATGTGACTCATCAGTTGGTCCAAATCCAACTTCTGCAGAATCTGTTGCAGCTTATGAATGGCAGTTCATCGTTGCTCAGTAACATGCAGAGTAGTCTCGCACTCTTGGGCAATCACAGTTTGATCAGTAACCCAGTGGAAGCAGATACAAATGGTCCAAACAGTACTCTCCCCAACAACTTGAGAGATCAAGAATTATATGCAAGCCCTGCTCTATTTCCTTCGGCACCAAATGAATCACGCCAGGATATTTCAGAATCATGGACAGACATAGAAGGAGCATCATCAGATCAAGAAGTTTCGGGTACCAATAATAGCCTCCCCGGAACAACATCACATGACATAAGGCAAGCAAAAAACCTACTTCCAACGTTTGACTCGGCCTCCTTCAACCATATGGAGATTAGCCCTATCACAGATGAAGTGTCAACCCAGTCAATTTCATCCACAATCTTTGATACTGATTGGGAGAAGCTCTTGGTAGATGATGATACAAGCGATTCCTTCTGGAAAGAACTCTTAGACTTGACGTCCACTTCCGCAGCTTGA 1038 0.4518 MGRPPCCEETGVKKGPWMPEEDEKLFNCISKHGSGNWKTVPKQAGLNRCGKSCRLRWTNYLRPDIKRGKFTEEEEKLIIKLHSVLGNKWSKIATHLPGRTDNEIKNLWNTNLRKKLLQMGIDPETHKPRTDLKHLLNLSQFLGVANNNLTSHWGHAGLGLQQPDVTHQLVQIQLLQNLLQLMNGSSSLLSNMQSSLALLGNHSLISNPVEADTNGPNSTLPNNLRDQELYASPALFPSAPNESRQDISESWTDIEGASSDQEVSGTNNSLPGTTSHDIRQAKNLLPTFDSASFNHMEISPITDEVSTQSISSTIFDTDWEKLLVDDDTSDSFWKELLDLTSTSAA 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1254g00004 345 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral1254g00004 345 CDD SANT 69 112 IPR001005 -
Pral1254g00004 345 FunFam Transcription factor MYB39 69 130 - -
Pral1254g00004 345 SMART sant 13 63 IPR001005 -
Pral1254g00004 345 SMART sant 66 114 IPR001005 -
Pral1254g00004 345 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pral1254g00004 345 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral1254g00004 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral1254g00004 345 CDD SANT 16 61 IPR001005 -
Pral1254g00004 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 61 IPR017930 -
Pral1254g00004 345 Gene3D - 68 135 - -
Pral1254g00004 345 Gene3D - 13 66 - -
Pral1254g00004 345 PANTHER F14D16.11-RELATED 1 318 - -
Pral1254g00004 345 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral1254g00004 345 MobiDBLite consensus disorder prediction 238 276 - -
Pral1254g00004 345 MobiDBLite consensus disorder prediction 235 276 - -
Pral1254g00004 345 FunFam MYB-related transcription factor 13 66 - -
Pral1254g00004 345 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1254g00004 Pral-Chr1254 28551 29880 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1254g00004 1 338 MYB Transcription Factor Family AT4G17785 41.962 4.26e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral1254g00004 Myb_DNA-binding 1.3e-15 CL0123