Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1253g00040 ATGCATTTTAGGACGATTGTGTGGTCTTCATTGTGCCTGGTGGTTGCCTGTACTGGCATGGCTTCTAGCAATCCATTCTTTGATGATATACAAAGCAAATCTGATGTTGATCCTCCTTCAAATGAAGAGCCAATGGATATCATTGAGCTTGTGAATGATCCTGCACAAACTGCACTAAAATCTAATGTGGCTGTTACAAGCAGTGTTCATGAACTTTTAGAGTGTCCCGTGTGTTTGAATGCAATGTACCCTCCAATCCACCAGTGTTCAAATGGCCATACTTTGTGTTCAGGTTGCAAACCCAGGGTCCACAACCGGTGTCCTACCTGTAGACATGAGCTCGGCAATATTAGATGCTTGGCATTGGAGAAGGTGGCTGCATCTTTGGAACTTCCCTGTAAATACCAGGCCTTTGGGTGCATGGGCATATATCCTTATTACTGCAAGCTGAAGCATGAATCTCAATGTGCATATAGACCATATAACTGTCCATATGCTGGTTCAGAATGCAGTGTCATTGGTGATATTCCTTTTCTGGTGGCCCATTTGAAAGATGATCACAAAGTGGACATGCATAATGGGAGCACTTTTAATCATCGTTATGTCAAATCAAACCCACAAGAAGTTGAAAACGCCACGTGGATGCTTACGGTCTTCAGTTGCTTTGGTCAATATTTTTGTCTACACTTCGAAGCTTTTCAGCTGGGGATGGCTCCAGTCTACATAGCCTTCTTGCGATTTATGGGTGATGATAATGAGGCAAAGAACTATAGCTACAGTCTCGAGGTTGGTGGTAATGGGAGGAAGATGACATGGCAGGGCGTGCCTAGAAGCATCAGGGACAGCCACCGCAAAGTTCGTGACAGTTTTGACGGGCTTATCATCCAAAGGAACATGGCCCTCTTCTTTTCCGGGGGAGACAGGAAGGAATTGAAGCTAAGAGTTACGGGGAGAATTTGGAAAGAACAGTGA 972 0.4455 MHFRTIVWSSLCLVVACTGMASSNPFFDDIQSKSDVDPPSNEEPMDIIELVNDPAQTALKSNVAVTSSVHELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQAFGCMGIYPYYCKLKHESQCAYRPYNCPYAGSECSVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMTWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1253g00040 323 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 184 316 IPR008974 GO:0005515
Pral1253g00040 323 FunFam E3 ubiquitin-protein ligase SINAT3 127 183 - -
Pral1253g00040 323 CDD Sina 189 317 - -
Pral1253g00040 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 127 IPR013083 -
Pral1253g00040 323 SUPERFAMILY RING/U-box 69 116 - -
Pral1253g00040 323 FunFam E3 ubiquitin-protein ligase SINAT5-like 184 316 - -
Pral1253g00040 323 CDD RING-HC_SIAHs 73 111 - -
Pral1253g00040 323 Pfam Seven in absentia protein family 117 316 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pral1253g00040 323 ProSiteProfiles Zinc finger RING-type profile. 75 111 IPR001841 -
Pral1253g00040 323 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Pral1253g00040 323 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 58 322 - -
Pral1253g00040 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 183 IPR013083 -
Pral1253g00040 323 FunFam E3 ubiquitin-protein ligase SINAT5-like 33 126 - -
Pral1253g00040 323 SUPERFAMILY TRAF domain-like 128 320 - -
Pral1253g00040 323 ProSiteProfiles Zinc finger SIAH-type profile. 128 188 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1253g00040 Pral-Chr1253 454028 457798 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1253g00040 42 323 C3H Transcription Factor Family AT2G41980 74.648 3.68e-161 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1253g00040 K04506 - gmx:100793457 603.594