Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1253g00021 ATGAGTCCACCTGCTGAGGAGAAGATGGAAGATGTTAAGCCATTAGCCGCCTCAGCCAACAGCTCACAGGGCGAACATGGTGACCCTGCTGACTCTCGATTCACTGAATTCTGCAAGAATGGATTGTCATTGGATGATGAAAGTTGCAGACAGGCAACGAAGCTGTTCACCGAAACCAAACACCTTCTACAGACCAATGTATCATCTCTCGGGAATGGAACGTATGAAGAAGCAGAACGGTATTGGTTTTCCTTTGTCTTGTACTCTGTTAAGAGATTGGCTGATAAGCATACGGACAGTGAGAAGGAAGTGACTGATAGCAATGGACTTACCTTGTGCCAGATATTGAGAAAGGCAAAGTTAAACATTGTGGACTTTTTCAAAGAACTTCCTCAGTTTCTTGTTAAGGGTGGTCCGATTTTAAGTAACTTATATGGCACAGATTGGGAAAACAGGCTTGAGGCAAAGGAGTTGCATGCAAACTTTCTTCACTTAAGCATTCTTAGCAAGTATTACAAACGTGCATTCGGGGAGTTCTTCTTGGTAAATGATGCTACTGAAAAAAATTCAGCTGCTTCAAGGGCTGGTGATTATGCATCTCAATATCATCGATTTGGATGGTTGGTTTTTTTGGCTCTTCGAGTCCATGCTTTCAGCCGATTTAAAGACTTGGTGACTTGCACCAATGGTTTAGTTTCTATATTGGCTATCTTGATTATTCATATTCCTGCTCGCTTCAGAAATTTTGACATTCATGATGCGTCACGCTTTGTTAAGAAGAGTAGCAAAGGTGTGGACATCATAGCATCACTTTGCAACATGTATGACACTTCAGAAGATGATGTGAGAAAAACTATGGAGAAAGCCAATAATTTAATTGCAGATATATTGAAGAAGAAGCCTTGTCTAGCATCTGAATGTGAAACCGCAACACTTGAGAATATTGACAAAGATGGTTTGTTCTACTTTAATGATCTTATGGAAGAATCATCTCTACCATCTTGTTTAAATATCTTAGAAAAGGATTATGATGATGCCATTCGTAACAAGGGTGAGCTGGATGAGAGGTTATTTATCAATGAGGAGGACAGCTTATTAGCTTCAGGAAGCTTGTCTGGAGGTTCAATGTCTGCAAGTGGTGTCAAGAGGAAATTTGATTCATTGGCGTCACCTACAAAGACGATTACAAGCCCACTCTCTCCCCAATGCTCTCCTGCATCTCATCATGCAAATGGCATTCCAATTAGCACAACTTCAAAGATGGCTGCCACTCCTGTAACCACTGCTATGACTACTGCTAAGTGGCTTCGTACTGTCATATGTCCACTTCCATCAAAGCCTTCTCCTGAGCTGGAGAAATTTCTGGCATCATGTGATAGGGATGTCTCAAGTGACGTAGTGCGCAGGGCACAGATTATATTGCAGGCTATATTTCCTAGTAGTCCTTTGGGAGAGCGATGTTTAACTGGAAGCCTTCAAAGTGCAAACCTCATGGACAATGTTTGGGCAGAACAACGGAGACTGGAAGCCCTGAAGTTATATTATAGGGTCCTGGAGGCAATGTGCAGAGCAGAGTCCCAAATACTGCATGCAACCAATTTAACGTCATTATTAACTAATGAGAGGTTCCATAGATGCATGCTTGCATGTTCTGCAGAATTAGTGCTGGCAACACATAAGACCGTAACAATGTTGTTTCCTGCAGTGCTAGAAAGGACTGGAATTACAGCTTTTGACCTTAGCAAGGTGATAGAAAGCTTCATAAGACATGAAGATTCTCTCCCAAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAACGGCTTTTAGAGAGTATGGTATGGGAAAAGGGTTCCTCGATGTATAATTCTTTGACAGTTGCCAGACCTTCCCTCTCTTCTGAAATAACTCGTCTCGGATTGTTAGCTGAACCAATGCCATCATTAGATGCAATTGCAACGCATATTAATTTCTTGTGGGGGGCTACCTCCGGGCCTTCCTTGCAGAAGCCTGAGACTTTACCAAGTCAAAATGGGGATATTAGGTCTCCTAAACGACTCTGCACAGAATATCGGAGTGTGCTAGCAGAACGAAATTCCTTTACCTCACCAGTGAAGGATCGACTTCTTCCCTTCAGTAACCTTAAGTCAAAGCTACCTCCTCCTTTGCAGTCAGCTTTTGCAAGTCCAACAAGACCAAATCCAGGGGGTGGGGGGGAGACTTGTGCAGAAACAGGGATCAATATCTTTTTTGGAAAGATCGTTAAGTTGGCAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTCCAATTGTCTCAACAGATAAGAGAGAATGTGTACCGTCTTTTCCAACAAATACTTAATCAAAGGACGTCACTTTTCTTCAACCGCCATATTGATCAAATCATTCTATGTTGTTTCTATGGAATTGCAAAGATTTCTCAACTGAACTTAACTTTTAGGGAGATCATTTACAATTATAGGAAGCAACCACAATGCAAACCACAAGTTTTTCGCGGTGTATTTATTGACTGGTCATCAACGCGCCGCAATGGGAGAACCGGACAGGAGCATGTTGATATCATTACATTTTACAATGAAATATTCATCCCCTCTGTAAAAGCTCTGCTGGTTGAGCTTGGTCCTGGGGGAACAACTACAAAAGCCAACCGGATACCTGAAGCCAACAACAGCAGTGATGACCATTTAGCTCAGTGTCCTGGATCTCCTAAAATTTCACCTTTTCCTAGCCTTCCTGATATGTCCCCGAAGAAAGTATCTGCATCACACAATGTGTATGTCTCACCATTGCGATCAGCCAAGATGGATGCCCTAATATCACATAGCTCAAAAAGCTACTATGCCTGCGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACCGCCATCAATAACCGTTTGAATGGCACCCGGAAGGTTAGAGGACCTCTCAACTTTGATGATGTTGATGTTGGCTTGGTCAGTGACTCCATGGTTGCAAACAGTCTCTATCTGCAGAATGGAAGTTGTGCGTCCTCATCTGGAGCACCAGTGAAGTCTGAGCAGCCGGACAGTTGA 3090 0.4288 MSPPAEEKMEDVKPLAASANSSQGEHGDPADSRFTEFCKNGLSLDDESCRQATKLFTETKHLLQTNVSSLGNGTYEEAERYWFSFVLYSVKRLADKHTDSEKEVTDSNGLTLCQILRKAKLNIVDFFKELPQFLVKGGPILSNLYGTDWENRLEAKELHANFLHLSILSKYYKRAFGEFFLVNDATEKNSAASRAGDYASQYHRFGWLVFLALRVHAFSRFKDLVTCTNGLVSILAILIIHIPARFRNFDIHDASRFVKKSSKGVDIIASLCNMYDTSEDDVRKTMEKANNLIADILKKKPCLASECETATLENIDKDGLFYFNDLMEESSLPSCLNILEKDYDDAIRNKGELDERLFINEEDSLLASGSLSGGSMSASGVKRKFDSLASPTKTITSPLSPQCSPASHHANGIPISTTSKMAATPVTTAMTTAKWLRTVICPLPSKPSPELEKFLASCDRDVSSDVVRRAQIILQAIFPSSPLGERCLTGSLQSANLMDNVWAEQRRLEALKLYYRVLEAMCRAESQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPSLSSEITRLGLLAEPMPSLDAIATHINFLWGATSGPSLQKPETLPSQNGDIRSPKRLCTEYRSVLAERNSFTSPVKDRLLPFSNLKSKLPPPLQSAFASPTRPNPGGGGETCAETGINIFFGKIVKLAAVRISGMVERLQLSQQIRENVYRLFQQILNQRTSLFFNRHIDQIILCCFYGIAKISQLNLTFREIIYNYRKQPQCKPQVFRGVFIDWSSTRRNGRTGQEHVDIITFYNEIFIPSVKALLVELGPGGTTTKANRIPEANNSSDDHLAQCPGSPKISPFPSLPDMSPKKVSASHNVYVSPLRSAKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGTRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGAPVKSEQPDS 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1253g00021 1029 CDD CYCLIN_AtRBR_like 747 878 - -
Pral1253g00021 1029 Pfam Retinoblastoma-associated protein B domain 747 874 IPR002719 GO:0005634|GO:0051726
Pral1253g00021 1029 Gene3D - 710 899 - -
Pral1253g00021 1029 SMART DUF3452_2 96 241 IPR024599 -
Pral1253g00021 1029 Gene3D - 427 615 - -
Pral1253g00021 1029 Pfam Retinoblastoma-associated protein A domain 424 625 IPR002720 GO:0005634|GO:0051726
Pral1253g00021 1029 Gene3D - 202 360 - -
Pral1253g00021 1029 Coils Coil 336 356 - -
Pral1253g00021 1029 Pfam Domain of unknown function (DUF3452) 103 241 IPR024599 -
Pral1253g00021 1029 FunFam Retinoblastoma-related protein 1 427 615 - -
Pral1253g00021 1029 FunFam Retinoblastoma-related protein 1 202 360 - -
Pral1253g00021 1029 SMART RB_A_2 424 625 IPR002720 GO:0005634|GO:0051726
Pral1253g00021 1029 MobiDBLite consensus disorder prediction 1 30 - -
Pral1253g00021 1029 SUPERFAMILY Cyclin-like 745 917 IPR036915 -
Pral1253g00021 1029 FunFam Retinoblastoma-related protein 1 698 910 - -
Pral1253g00021 1029 SUPERFAMILY Cyclin-like 432 627 IPR036915 -
Pral1253g00021 1029 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 31 1027 IPR028309 GO:0006357|GO:0051726
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1253g00021 Pral-Chr1253 151102 158577 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1253g00021 9 1029 Core Cell Cycle Gene Families AT3G12280 70.417 0.0 1429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Pral1253g00021 RB_A 3.3e-64 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1253g00021 K04681 - qsa:O6P43_001515 1688.7