Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1253g00009 ATGCTATTTTGCCTTGTTTCTGTATTGTTTGTTTTTTCACCATTACTGAAGGTTAGTGAAGAAGATGAGAAGGGAAGAAGGGGGATGCCAGGCTTGGATTCTCAATTGCCAGTTCCAAATGCACGCCATATTGGAGGAAGCACAGTTGAATCTTTTCATGTTTCTGACTTTGGAGCCTTTGATCAATCAGTTAGAGATAATGCTGTTAACTTGACTGGAGACCAAGTTTATAACTCACTCAAAACAAGTAGCCAAACAAATTCTCTTGGTCCCATTCCTGTTGGTAATTTTGATAAGGTTCCAACTTCACTTGATATAAACAAATTCACTAAGCAATTAGAGTCCCAAGTGTTGCAGTTGCAAAAGGCCCAGCCATCAAATTTGGTGACCGTATCAGGTGCTAATACAGAAAACCAGGAGTCTGCCATGGCTGATGTCAGTCCCAGGACAGATATTTCGACAGATGCTGATACTGACGAAAAGAATGGGCGGTTTGATAGAAGTCTGTCCAATGCTGCTGTTGCTTCTGATTCCAGTGACAGATCAAAGGACAAGTTGGATCAGAAGACTCTACGCAGGCTTGCTCAGAATCGAGAGGCTGCGAGAAAAAGCCGGTTGAGAAAGAAAGCTTATGTCCAGCAATTAGAAAGTAGTCGGTTGAAGTTGACCCAACTAGAGCAAGAACTCCAGCGAGCTAGACAGCAGGGAATCTTCATATCAAGCTCAGGCGACCAGGCACATTCAATGGGTGGAAATGGGGCGATGGCATTTGATGTAGAATATTCTAGGTGGCTAGAAGAGCAGAATCGACAAATTAATGAGCTAAGAGCAGCTGTAAACTCCCATGCAAGTGATACAGAACTTCGCATGATAATTGATGGTATATTGGCACATTATGATGAGATTTTTAAGCTGAAGAGCTCTGCTGCTAAGAATGATGTTTTCCATTTGTTGTCTGGCATGTGGAAAACACCTGCCGAGAGATGCTTTCTGTGGCTCGGTGGTTTTCGGTCATCCGAACTCCTCAAGCTTTTGGTAAATCAACTGGAACCTCTTACTGAGCAGCAGTTGGTCGGTATTACCAACTTGCAGCAATCGTCTCAACAGGCAGAAGATGCATTATCACAGGGTATGGAAGCATTGCAGCAGTCTCTAGCCGAGACACTGTCCAGTGGATCCCTTGGTTCATCTGGTTCATCAGGGAATGTGGCGAATTACATGGGCCAAATGGCTATGGCCATGGGTAAGCTAGGAACCCTTGAGGGATTCATTCGGCAGGCTGACAATCTGAGGCAGCAAACACTGCAACAAATGCACCGGATATTGACAACTCGTCAGTCGGCTCGCGCCTTGCTCGCCATACATGATTATTTCTCTCGGCTGCGTGCTCTCAGCTCCCTCTGGCTGGCTCGTCCCAGAGATTGA 1425 0.4533 MLFCLVSVLFVFSPLLKVSEEDEKGRRGMPGLDSQLPVPNARHIGGSTVESFHVSDFGAFDQSVRDNAVNLTGDQVYNSLKTSSQTNSLGPIPVGNFDKVPTSLDINKFTKQLESQVLQLQKAQPSNLVTVSGANTENQESAMADVSPRTDISTDADTDEKNGRFDRSLSNAAVASDSSDRSKDKLDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMGGNGAMAFDVEYSRWLEEQNRQINELRAAVNSHASDTELRMIIDGILAHYDEIFKLKSSAAKNDVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1253g00009 474 ProSiteProfiles DOG1 domain profile. 254 471 IPR025422 GO:0006351|GO:0043565
Pral1253g00009 474 Gene3D - 188 239 - -
Pral1253g00009 474 MobiDBLite consensus disorder prediction 135 191 - -
Pral1253g00009 474 Pfam bZIP transcription factor 189 229 IPR004827 GO:0003700|GO:0006355
Pral1253g00009 474 Pfam Seed dormancy control 271 346 IPR025422 GO:0006351|GO:0043565
Pral1253g00009 474 CDD bZIP_HBP1b-like 189 241 - -
Pral1253g00009 474 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 187 231 IPR004827 GO:0003700|GO:0006355
Pral1253g00009 474 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 192 207 IPR004827 GO:0003700|GO:0006355
Pral1253g00009 474 SUPERFAMILY Leucine zipper domain 189 232 IPR046347 GO:0003700|GO:0006355
Pral1253g00009 474 MobiDBLite consensus disorder prediction 152 166 - -
Pral1253g00009 474 FunFam BZIP family transcription factor 188 237 - -
Pral1253g00009 474 PANTHER TRANSCRIPTION FACTOR TGA9 125 473 - -
Pral1253g00009 474 Coils Coil 265 285 - -
Pral1253g00009 474 SMART brlzneu 185 248 IPR004827 GO:0003700|GO:0006355
Pral1253g00009 474 Coils Coil 208 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1253g00009 Pral-Chr1253 42501 50636 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1253g00009 143 474 bZIP Transcription Factor Family AT3G12250 81.928 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pral1253g00009 DOG1 7.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1253g00009 K14431 - pvy:116144120 667.537