Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1253g00005 ATGGTGTTCAGCCATATTGGAGGAAGCACAGTTGAATCTTTTCATGTTTCTGACTTTGGAGCCTTTGATCAATCAGTTAGAGATAATGCTGTTAACTTGACTGGAGACCAAGTTTATAACTCACTCAAAACAAGTAGCCAAACAAATTCTCTTGGTCCCATTCCTGTTGGTAATTTTGATAAGGTTCCAACTTCACTTGATATAAACAAATTCACTAAGCAATTAGAGTCCCAAGTGTTGCAGTTGCAAAAGGCCCAGCCATCAAATTTGGTGACCGTATCAGGTGCTAATACAGAAAACCAGGAGTCTGCCATGGCTGATGTCAGTCCCAGGACAGATATTTCGACAGATGCTGATACTGACGAAAAGAATGGGCGGTTTGATAGAAGTCTGTCCAATGCTGCTGTTGCTTCTGATTCCAGTGACAGATCAAAGGACAAGTTGGATCAGAAGACTCTACGCAGGCTTGCTCAGAATCGAGAGGCTGCGAGAAAAAGCCGGTTGAGAAAGAAAGCTTATGTCCAGCAATTAGAAAGTAGTCGGTTGAAGTTGACCCAACTAGAGCAAGAACTCCAGCGAGCTAGACAGCAGGGAATCTTCATATCAAGCTCAGGCGACCAGGCACATTCAATGGGTGGAAATGGGGCGATGGCATTTGATGTAGAATATTCTAGGTGGCTAGAAGAGCAGAATCGACAAATTAATGAGCTAAGAGCAGCTGTAAACTCCCATGCAAGTGATACAGAACTTCGCATGATAATTGATGGTATATTGGCACATTATGATGAGATTTTTAAGCTGAAGAGCTCTGCTGCTAAGAATGATGTTTTCCATTTGTTGTCTGGCATGTGGAAAACACCTGCCGAGAGATGCTTTCTGTGGCTCGGTGGTTTTCGGTCATCCGAACTCCTCAAGCTTTTGGTAAATCAACTGGAACCTCTTACTGAGCAGCAGTTGGTCGGTATTACCAACTTGCAGCAATCGTCTCAACAGGCAGAAGATGCATTATCACAGGGTATGGAAGCATTGCAGCAGTCTCTAGCCGAGACACTGTCCAGTGGATCCCTTGGTTCATCTGGTTCATCAGGGAATGTGGCGAATTACATGGGCCAAATGGCTATGGCCATGGGTAAGCTAGGAACCCTTGAGGGATTCATTCGGCAGGCTGACAATCTGAGGCAGCAAACACTGCAACAAATGCACCGGATATTGACAACTCGTCAGTCGGCTCGCGCCTTGCTCGCCATACATGATTATTTCTCTCGGCTGCGTGCTCTCAGCTCCCTCTGGCTGGCTCGTCCCAGAGATTGA 1311 0.4569 MVFSHIGGSTVESFHVSDFGAFDQSVRDNAVNLTGDQVYNSLKTSSQTNSLGPIPVGNFDKVPTSLDINKFTKQLESQVLQLQKAQPSNLVTVSGANTENQESAMADVSPRTDISTDADTDEKNGRFDRSLSNAAVASDSSDRSKDKLDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMGGNGAMAFDVEYSRWLEEQNRQINELRAAVNSHASDTELRMIIDGILAHYDEIFKLKSSAAKNDVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRD 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1253g00005 436 Pfam bZIP transcription factor 151 191 IPR004827 GO:0003700|GO:0006355
Pral1253g00005 436 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 154 169 IPR004827 GO:0003700|GO:0006355
Pral1253g00005 436 MobiDBLite consensus disorder prediction 114 128 - -
Pral1253g00005 436 ProSiteProfiles DOG1 domain profile. 216 433 IPR025422 GO:0006351|GO:0043565
Pral1253g00005 436 CDD bZIP_HBP1b-like 151 203 - -
Pral1253g00005 436 Pfam Seed dormancy control 233 308 IPR025422 GO:0006351|GO:0043565
Pral1253g00005 436 Coils Coil 170 197 - -
Pral1253g00005 436 FunFam BZIP family transcription factor 150 199 - -
Pral1253g00005 436 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 149 193 IPR004827 GO:0003700|GO:0006355
Pral1253g00005 436 Coils Coil 227 247 - -
Pral1253g00005 436 MobiDBLite consensus disorder prediction 97 153 - -
Pral1253g00005 436 SMART brlzneu 147 210 IPR004827 GO:0003700|GO:0006355
Pral1253g00005 436 PANTHER TRANSCRIPTION FACTOR TGA9 87 435 - -
Pral1253g00005 436 SUPERFAMILY Leucine zipper domain 151 194 IPR046347 GO:0003700|GO:0006355
Pral1253g00005 436 Gene3D - 150 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1253g00005 Pral-Chr1253 41928 50636 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1253g00005 105 436 bZIP Transcription Factor Family AT3G12250 81.928 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pral1253g00005 DOG1 6.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1253g00005 K14431 - rcu:8270850 647.121