Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1242g00001 ATGTCAGAAGACGAACACGAGATTTATAATGAAAAAAATAAGTGTGATGAGGAAACTTCGCTGGGCTCTTCTTCCCACAAGTGTTCATCGTTCGACTTGAATGAGGAAGCTACCAGTGAAGAAGAGGAAGAACAAGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGAAGGATCGCAGAGATTTAGAAGCAGAAGAAGAGAACGAGAAAATGAAGGAACATGAAGGTACTTCATCATCAAACAGAAGCACATCAAGAGAACGAAATGAAGGAAAAGGCACAGTGAGACAATATGTCAGATCCAAGATGCCTAGGCTTCGCTGGACTCCAGATCTTCATCTTTCTTTTGTTCATGCTGTTAAACGCCTTGGTGGTCAAGAGAGAGCAACACCCAAGTTGGTGCTTCAGCTAATGAATGTGAGGGGACTCAGCATTGCTCATGTGAAGAGTCACTTGCAGATGTATCGGAGTAAAAAACTTGATGAGGCTGGCCAAGTTATAAGTCAAACGTACAGATCGCAAGGTGGTCGTATGTCTCAGTTATCGTATCAATCAGTGAACACAAGGCAACAATTGAAGATGGGAAATGGTGGAATTATTCTAACTACCAATTCCAACGACCATGCTGGCTTTGTTCATCATCATCCTCTCTCCAAGCCTTCTTTTACTCTTTCGCACTCCCATACAATGGCCACTGATTCCAGGCACCAACAATGGCACTTCAATAACCAGTGGTATAGAAGGCAAAGTTGCGTGACAAACAACGAAGTGATGATGATGATGCCCTCAACGACAGACCGAATTGCACCCATGAGACCCAGCCAATTTCTGGAAGAGAAAAGGTGGCCTCCATTAGAAATTACTAGTAATAACAGCAACAACAATAATAATCAGCATTATTATTGGAAGTTCAAGAAAATGCCTCCGACCAGTAATATTATTAACACTTGGGCAGATACTAATATTAGTATTAATGATTCACAATCTGGATTTCACCAACTTGGCACTACGCATGAGCCACCTGATCAATGGAGTTTTGGAAATTTCAAGAGCAATACCAGCAACAGTTCTCAGAGTTTGAAGCTAGAATTTGAGCCCCCATTTCGGATTAAGTTAAATGAAGAGAAAGTAGAGAAAGAAAAGCAATCGTTGCCTGATCTGCAACTGGGATTGAATTATCAGAATGCTGATCGTTGCAAGGAGACCCAAGAAATTAACACTAAGCTTTCCCTTTCTTAA 1242 0.4195 MSEDEHEIYNEKNKCDEETSLGSSSHKCSSFDLNEEATSEEEEEQEEEEEEEEEEEEKDRRDLEAEEENEKMKEHEGTSSSNRSTSRERNEGKGTVRQYVRSKMPRLRWTPDLHLSFVHAVKRLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVISQTYRSQGGRMSQLSYQSVNTRQQLKMGNGGIILTTNSNDHAGFVHHHPLSKPSFTLSHSHTMATDSRHQQWHFNNQWYRRQSCVTNNEVMMMMPSTTDRIAPMRPSQFLEEKRWPPLEITSNNSNNNNNQHYYWKFKKMPPTSNIINTWADTNISINDSQSGFHQLGTTHEPPDQWSFGNFKSNTSNSSQSLKLEFEPPFRIKLNEEKVEKEKQSLPDLQLGLNYQNADRCKETQEINTKLSLS 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1242g00001 413 MobiDBLite consensus disorder prediction 1 21 - -
Pral1242g00001 413 FunFam Myb family transcription factor 103 161 - -
Pral1242g00001 413 Coils Coil 30 73 - -
Pral1242g00001 413 Gene3D - 104 161 - -
Pral1242g00001 413 MobiDBLite consensus disorder prediction 64 96 - -
Pral1242g00001 413 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 82 233 IPR046955 GO:0003700
Pral1242g00001 413 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 161 IPR017930 -
Pral1242g00001 413 NCBIfam myb-like DNA-binding domain, SHAQKYF class 105 160 IPR006447 GO:0003677
Pral1242g00001 413 MobiDBLite consensus disorder prediction 1 99 - -
Pral1242g00001 413 Pfam Myb-like DNA-binding domain 107 157 IPR001005 -
Pral1242g00001 413 SUPERFAMILY Homeodomain-like 103 159 IPR009057 -
Pral1242g00001 413 MobiDBLite consensus disorder prediction 35 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1242g00001 Pral-Chr1242 19365 25976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1242g00001 96 164 G2-like Transcription Factor Family AT2G42660 81.159 2.24e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pral1242g00001 Myb_DNA-binding 8.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1242g00001 - - pcin:129286853 567