Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1239g00034 ATGGTAGGGTTGGAACTCATACCAGTGGGTACAATTCTGGCTGTGCTAACCAATCAGATTATAAAAACAGCTAATGCAGCAGTTGAAGTTCTTGTTGAAAAAGAAACTTTTAAGGTTCTTTCACGACACTTGTACGATATTGAACCAGTTCTAAAGGAACTACAGCTTCAAGAATTGAATGAGTCCCAAGCTGCAAGACATGCTCTGGAGTCTCTTGAAGAAGATGTGAAGAGGGCAAATAAAGTAGTTGAGAAGTATAGGAACCGTGGTCGTTTTTACTTGCTGTTTAAGTGCAGGCACATAGTTCATGAAGTTGAAGAAGTCACAAGAAACATTGGAAAGTCCCTGGCTGTACTATCACTTGCAAATACTGAAGTCTTATCACGAATTTCTGATCAGGTTGATAGATTACAAAATGAGATGCAAAGGGTGGAGTTCGAGGCACCACATTCTCGGCTTCAAATAGTGGAGAGGTTAGACCAGGGCCTTAGGGAGCAGAAATTAGATCAGGCTTTTGCAAATGACATGCTTGAAGCAATTGCAAGGGCAGTTGGCGTGCCGGTAGATCCATCGGTGATAAGCAAAGAGCTGGCCAGCATTAGGAAAGAAAAAGAAGAAGCTGCAGACAGGAAAGAAAGAGCTGAAGTCTTCTTCTTGGAGCAGGTCATTGAATTACTATCCCGAGCTGATGCTGCAAGAGATTATGAAGAAGTTAAGAAACAATACTATGAAAGACTTCAGGTGATAGAAAGATACAATTCAAGGGAAAAATATATACAGCCGCTTAATTCTTTCGTTTGTTGTATAACTGGGACTGTTATGGTAGATCCAGTAAGCCTTTGCACTGGTACTACTTGTGAGAGATATGCCATTGAGGCTTGGTTTGACAGTGGCATGAGGACTGACCCAGAAACTAAAGAAGTACTTGAAGAGACTAAGTTAAGATCTAATGTTCCTCTTAGACAATCCATAGAGGAGTGGAGAGAACTTAATTACTGCCTTACAATCAGGTCTATCAGGGAAGACCTTTTATCAAATTCTAACTTATATGTGATAGAACCCTTGAGGCAAGTGCGGGATCTCATAAGTGACAATTCTATAAACAAGGATTGGATCTCTATAGGAGGGCTCACCGACATTATTATCTCTATCCTTGGGAGCACTGATAATGGAGAAGTGAAGGTCAACATATTGAGTACATTGAATGATGCAGTAGAAGGGCACATGAGAAACAAGGAAAAAGTATCAGAATCTCAAGGATGGGATCACATTATTTGTTGCTTGGGCAGCAACTCTAGAATTTCAAAAGCTGCAATTAACTTGCTGTATACGTTACTGCAAGATCGAACTGGTTGGAATGTGTGTCTCTGTAGAAAACTCTCTCAACATCACAGCGCAATTTCTTTCCTTGTTAACCTTCGAAAGGGTCCTGATGAGGAGTCAGCTGAGATTGCAGAAAAGATTTTGATGGAGCTTTTCGACATAGATGAGGTCAACATTTCTAATGCTGCCAAGTTTGGCTGGTATAAACCTCTTGTCGATCGTATGGTTCAAGGAGTAGAATCTTCAAGAATATCAATGGCAAAAACCATTGTGAATATGGAGCTGAGTGATTCAAATTTGAACCTCCTTGGTGAAGAAGGAGTTATACCTTCTTTGCTTGAAATGCTGTCTGGCAATATTGAATCAAAAGAAGTCTCATTATCTGCACTGGTCAAACTATCAGGTTCTCGTGCTAATAAAAGGGTTATAGCTGCAATGGGGGGAGTTCCTATTATTCTAGAACAAATGTTCCCTCCTTCTATGAGAACTCTCATTACCATCAGATGCTCTGAAATCTTGGAGAAGCTTTCTGCTGATGATGATGGAATTGATTTCTTTGTTGACAGAGAAGGGAAACAACTTGAGTTAGATTCCATTATCACCAAATTACTTTCTCTTCAGCAGAGTCCCACCTTAGCCCACAATATCCGCAAGCCCTCTTTGCGTGCACTTCTTGGAATTTGCAAGTTTGAGACTGGTTTAGTCAAGAAGGCTGTTCTGGCTGCCAGTGGTGTATCTCTAATCCTTCCTCTTCTTGATGACTCTGATTCAGAAATCAGACAGACTGCCATAAATCTGCTCTTTCTTTTCTCCCAACATGAGCCAGATGGGGTGGTTGAATACCTCTTCAGGCCAAGGAGGCTGGAGGCTTTGGTGGGATTTCTAGAGACTGATGACAATGATGTGCAGATGGCTGCTGCTGGTTTGCTAGCAAACCTACCAAAATCTGAAAAAGAGCTTACTACAAAGCTGATTGAATTGGGTGGACTTGATGCAATCATATGCATTTTGAAAACGGGAACAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTCACAGATCCCACAAACATTGAGTCACAGCGCGATTTGGTTAAGCGTGGAATATATCCTTTGCTTGTGAATTTTCTCAACACTGGTTCAATAACAGCAAAGGCTAGAGCAGCAGCCTTCATAGGAGATCTTTCTATGAGCACCCCAATGCTCACACTTTCAGCCAAATCAACGGGCTGCTGGTGTTTTAGATCATCAAGAGTTCCATTATGCCCAGCACATGGTAGTGTATGCAATGTGAACAACACGTTTTGTCTCTTGCAAGCACAAGCTTTGCCTGGTTTGGTAAAACTCTTACGTGGGGAGGTTGATGTCACTGCTTATGAAGCAATACAGACACTTTCAACATTGGTTTTGGAAGATTGTCCTCAAAGGGGAGCTCGTGTTTTGCACGAATCAAATGCCATAATACCCCTTCTGGATATTCTGACATGGGGGTCTGATTCTCTCAAGTCTGAGGCTCTAGGACTCTTGGAGAAGGTCTTTGTATCAAAGGAAATTGTGGAATTCCACGGCGTAACAGCTAGATCACGTTTGGTTGGTTTAACAGGGATGAATATATATGGGGATGGCCATCTCAGAAGAAAAGCTGCCAAGGTATTGTCATTGATTGAACGGTATTCAAGGTCATCATCTGCTGCTGTTTCAGGAGTTCTGGAGTGA 3048 0.4173 MVGLELIPVGTILAVLTNQIIKTANAAVEVLVEKETFKVLSRHLYDIEPVLKELQLQELNESQAARHALESLEEDVKRANKVVEKYRNRGRFYLLFKCRHIVHEVEEVTRNIGKSLAVLSLANTEVLSRISDQVDRLQNEMQRVEFEAPHSRLQIVERLDQGLREQKLDQAFANDMLEAIARAVGVPVDPSVISKELASIRKEKEEAADRKERAEVFFLEQVIELLSRADAARDYEEVKKQYYERLQVIERYNSREKYIQPLNSFVCCITGTVMVDPVSLCTGTTCERYAIEAWFDSGMRTDPETKEVLEETKLRSNVPLRQSIEEWRELNYCLTIRSIREDLLSNSNLYVIEPLRQVRDLISDNSINKDWISIGGLTDIIISILGSTDNGEVKVNILSTLNDAVEGHMRNKEKVSESQGWDHIICCLGSNSRISKAAINLLYTLLQDRTGWNVCLCRKLSQHHSAISFLVNLRKGPDEESAEIAEKILMELFDIDEVNISNAAKFGWYKPLVDRMVQGVESSRISMAKTIVNMELSDSNLNLLGEEGVIPSLLEMLSGNIESKEVSLSALVKLSGSRANKRVIAAMGGVPIILEQMFPPSMRTLITIRCSEILEKLSADDDGIDFFVDREGKQLELDSIITKLLSLQQSPTLAHNIRKPSLRALLGICKFETGLVKKAVLAASGVSLILPLLDDSDSEIRQTAINLLFLFSQHEPDGVVEYLFRPRRLEALVGFLETDDNDVQMAAAGLLANLPKSEKELTTKLIELGGLDAIICILKTGTMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVNFLNTGSITAKARAAAFIGDLSMSTPMLTLSAKSTGCWCFRSSRVPLCPAHGSVCNVNNTFCLLQAQALPGLVKLLRGEVDVTAYEAIQTLSTLVLEDCPQRGARVLHESNAIIPLLDILTWGSDSLKSEALGLLEKVFVSKEIVEFHGVTARSRLVGLTGMNIYGDGHLRRKAAKVLSLIERYSRSSSAAVSGVLE 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1239g00034 1015 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1007 - -
Pral1239g00034 1015 Gene3D - 8 123 IPR036537 GO:0007166
Pral1239g00034 1015 Pfam MCAfunc domain 24 154 IPR045766 -
Pral1239g00034 1015 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Pral1239g00034 1015 SUPERFAMILY ARM repeat 469 957 IPR016024 -
Pral1239g00034 1015 CDD MLKL_NTD 10 145 - -
Pral1239g00034 1015 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 335 IPR013083 -
Pral1239g00034 1015 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Pral1239g00034 1015 Coils Coil 62 89 - -
Pral1239g00034 1015 Coils Coil 127 147 - -
Pral1239g00034 1015 Gene3D - 631 1009 IPR011989 -
Pral1239g00034 1015 Gene3D - 355 630 IPR011989 -
Pral1239g00034 1015 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Pral1239g00034 1015 SUPERFAMILY RING/U-box 248 330 - -
Pral1239g00034 1015 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 727 754 IPR000225 GO:0005515
Pral1239g00034 1015 SMART arm_5 408 447 IPR000225 GO:0005515
Pral1239g00034 1015 SMART arm_5 758 798 IPR000225 GO:0005515
Pral1239g00034 1015 SMART arm_5 673 713 IPR000225 GO:0005515
Pral1239g00034 1015 SMART arm_5 537 576 IPR000225 GO:0005515
Pral1239g00034 1015 SMART arm_5 917 958 IPR000225 GO:0005515
Pral1239g00034 1015 SMART arm_5 577 619 IPR000225 GO:0005515
Pral1239g00034 1015 SMART arm_5 716 756 IPR000225 GO:0005515
Pral1239g00034 1015 SMART arm_5 874 914 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1239g00034 Pral-Chr1239 645000 650433 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1239g00034 264 970 U-box Gene Family AT1G76390 27.177 8.51e-40 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1239g00034 - - gsj:114377374 1497.26