Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1239g00032 CACTCTGTGGGTTGCTCCTTCATTTTCGCCCTCTTTTCCCTCGTCAACCCACTCAGCCATGGAACCAGGCGCTCCTCCGCCGCCTATGCCGCCGCCACTCCCGTCACCCCTCCGGCATCACCCTCTCCCTCATCCTCTGCCGTCACCATCCTCGGAAAGTACCAGTTGATCCGTCTCCTAGGCCGCGGCAGCTTCGCCAAGGTTTACCAGGCTCGATCCTTAATCGACGGCTCCATCGTCGCCGTGAAAATCATTGACAAGTCGAAAACTAATGCCTCCATGGAGCCTCGGATTGTTCGTGAGGTCGATGCAATGCGACGGCTTCACGACCACCCTCATATTCTTAAAATCCAAGAGGTTTTGGCTACGAAGACGAAGATCTACCTGATTGTGGAGTTCGCTGCCGGCGGGGAGTTATTCTCCAAGATCTCGCGTAAAGGCCGGATGACGGAGGCGGTGGCTCGGCGGTACTTCCAGCAATTGGTTTCCGCCCTATGTTTCTGCCACAAAAACGGCGTCGCACACCGTGATCTGAAGCCTCAGAATCTTCTCTTGGACCACGAGGGGAATCTGAAGGTCTCCGATTTCGGACTCTCCGCCTTACCTGAACAGCTTAAAAACGGGTTGCTCCACACGGCTTGTGGCACGCCGGCTTATACCGCGCCGGAGATCCTCCGCCGGCGCGAATACGAAGGCTCGAAAGCCGACGCGTGGTCGTGCGGGCTTATACTCTACGTACTGCTCGCCGGCTACCTCCCGTTCTCCGACGCCAACATCCCTGAGATGTGCAAGAAGATCAGCCGGCGAGATTACCAGTTCCCGGAGTGGATGTCCAAGCCGGCGCGTTTCGTGATTAACCGACTACTCGATCCGAACCCGAAGAATCGGATGAGTCTAGAATCTCTCTATCAAAACTCTTGGTTCAAGAAATCGCTCAGGCCCCAACCCGACGAGAGCTTATTCGAGTCGGGTCCCACCGCGAAATCGTATCAAAAGCTCGAGAGGATGGGTTCGGGCGTGAACGCCTTCGACATAATCTCCATGTCATCAGGTCTGGACCTGACGGGGTTGTTCGAAACGACGTCGGACAACAGGAGAGAAAAGAGATTCACATCGAATGCTTCAATGAAAGCAGTGGAAGAGAAAGTGAAGGAAGTGGGAGGAATTTTAGGGTTCAAAGTCGAGATTAGTAAGAACGGAGCTATTGGCTTAGGGAAAGGAAAGGTGGTTCTTGTTGTGGAGGTGTTTGAGATAGTTCGTGAGCTGTTGATGGTGACAGTGAAAGTGATGAATGGTGGGTTTGAGTTTGATGAGGTCCACTGGGGAGACTGGAAATCTGGGCTTCAGGATGTTGTCCTTTCATGGCACAATGAATCGCTGTGA 1383 0.538 HSVGCSFIFALFSLVNPLSHGTRRSSAAYAAATPVTPPASPSPSSSAVTILGKYQLIRLLGRGSFAKVYQARSLIDGSIVAVKIIDKSKTNASMEPRIVREVDAMRRLHDHPHILKIQEVLATKTKIYLIVEFAAGGELFSKISRKGRMTEAVARRYFQQLVSALCFCHKNGVAHRDLKPQNLLLDHEGNLKVSDFGLSALPEQLKNGLLHTACGTPAYTAPEILRRREYEGSKADAWSCGLILYVLLAGYLPFSDANIPEMCKKISRRDYQFPEWMSKPARFVINRLLDPNPKNRMSLESLYQNSWFKKSLRPQPDESLFESGPTAKSYQKLERMGSGVNAFDIISMSSGLDLTGLFETTSDNRREKRFTSNASMKAVEEKVKEVGGILGFKVEISKNGAIGLGKGKVVLVVEVFEIVRELLMVTVKVMNGGFEFDEVHWGDWKSGLQDVVLSWHNESL 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1239g00032 460 Pfam Protein kinase domain 54 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1239g00032 460 Pfam NAF domain 340 395 IPR004041 GO:0007165
Pral1239g00032 460 ProSiteProfiles NAF domain profile. 335 359 IPR018451 GO:0007165
Pral1239g00032 460 FunFam Non-specific serine/threonine protein kinase 336 453 - -
Pral1239g00032 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Pral1239g00032 460 CDD CIPK_C 341 449 - -
Pral1239g00032 460 ProSitePatterns Protein kinases ATP-binding region signature. 60 83 IPR017441 GO:0005524
Pral1239g00032 460 Gene3D Transferase(Phosphotransferase) domain 1 136 325 - -
Pral1239g00032 460 FunFam Non-specific serine/threonine protein kinase 44 336 - -
Pral1239g00032 460 SUPERFAMILY Protein kinase-like (PK-like) 50 316 IPR011009 -
Pral1239g00032 460 ProSiteProfiles Protein kinase domain profile. 54 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1239g00032 460 Gene3D Kinase associated domain 1, KA1 337 453 - -
Pral1239g00032 460 Gene3D Phosphorylase Kinase; domain 1 42 135 - -
Pral1239g00032 460 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 48 425 - -
Pral1239g00032 460 FunFam Non-specific serine/threonine protein kinase 39 135 - -
Pral1239g00032 460 SMART serkin_6 54 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1239g00032 460 CDD STKc_AMPK-like 53 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1239g00032 Pral-Chr1239 600636 602452 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1239g00032 38 457 CBL-interacting serine-threonine protein kinases AT4G14580 57.611 1.68e-162 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Pral1239g00032 Pkinase 2.5e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1239g00032 K12761 - gmx:100784173 598.586