Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1239g00013 ATGGAAAACAAAGTGGCTTTTGAGAGTGATCTCAATCTCAAGGATACAGAGCTCAGATTGGGGCTGCCAGGAAGGGAAGAACAAAAATCAGTGGTTAGTTCTAAGAACAACAACAAGAGGCCTTTATCTGAAGCTTCTGAGGATTGTGGAACAAAGGGTTCTAATGAATCAGCCCCTCCAGCCAAGGCAAAGATTGTGGGGTGGCCACCAATCAGATCTTACAGGAAGAACAGCTTACAGGAGGGTGACGCTTCTGGGATTTATGTGAAAGTGAGTATGGATGGCGCTCCATACCTCAGGAAGATTGATTTGAAGGTTTACGATGGCTATCCAGAACTCCTCAAAGCTTTAGAAAACATGTTCAAGTTAACCATAGGTCAGTACAATGAAAGAGAGGGTTACAAAGGGTCAGAATTTGCACCTACATATGAGGACAAGGATGGTGACTTGATGCTTGTTGGAGATGTTCCATGGGACATGTTCAGGACTTCCTGCAAAAGACTAAGAATCATGAAAGGATCAGAAGCTAGAGGATTGGGTTGTGGAGTATGA 552 0.4384 MENKVAFESDLNLKDTELRLGLPGREEQKSVVSSKNNNKRPLSEASEDCGTKGSNESAPPAKAKIVGWPPIRSYRKNSLQEGDASGIYVKVSMDGAPYLRKIDLKVYDGYPELLKALENMFKLTIGQYNEREGYKGSEFAPTYEDKDGDLMLVGDVPWDMFRTSCKRLRIMKGSEARGLGCGV 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1239g00013 183 MobiDBLite consensus disorder prediction 17 63 - -
Pral1239g00013 183 Gene3D - 80 183 - -
Pral1239g00013 183 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 177 IPR003311 GO:0005634|GO:0006355
Pral1239g00013 183 SUPERFAMILY CAD & PB1 domains 77 172 - -
Pral1239g00013 183 FunFam Auxin-responsive protein 81 183 - -
Pral1239g00013 183 Pfam AUX/IAA family 47 180 IPR033389 -
Pral1239g00013 183 ProSiteProfiles PB1 domain profile. 86 173 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1239g00013 Pral-Chr1239 333110 334694 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1239g00013 89 182 B3 DNA Binding Superfamily AT4G23980 34.043 8.00e-11 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pral1239g00013 AUX_IAA 1.8e-51 CL0072