Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1239g00012 ATGGCAAGTTTGAATTTGAGGGAGACGGAGCTGTGTCTGGGGTTACCCGGCGGCGTCGGTGGCGAGGCGGTGGAAGCCGCCGTCACTCCAAAGGCCTCTGGTAACAAGAGAGCTTTCTCCGCAACTGTTGATCTGAAGCTCAACCTCGCCGCCGATGATTCCAAGGATGCCGCCGGCGAAGAAGAAGAAGATCTAACCAATCAGAACCACAAGAACATCGCCTCCTCTAACAAGAACCCAATCAAGCCACCCGCAAAGGCACAAGTGGTGGGTTGGCCACCAGTGAGGTCATACAGGAAGAACGTGATGGCACAGAAGGTGAGCAGTAGCGAAGATGGGAATACTGAGGAGAAGACGGCGGCGCCGCCAGCTCTGGCGACTGTCGGAGGATCACTTGTGAAGGTGTGTATGGATGGTGCACCCTACCTTAGGAAGGTGGATTTGAAGATGTACAAAAGCTACCAACAACTTTCTGATGCCTTGGCCAAAATGTTCAGCTCCTTCACCATGGGGAAGTATGAGGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTGCTGAACAGTTCTGAGTATGTGCCAACCTATGAAGATAAGGACGGTGATTGGATGCTCGTTGGCGATGTCCCATGGGAGATGTTCGTTGATTCATGCAAGCGTCTCCGAATAATGAAAGGATCAGAAGCTATTGGACTTGCCCCAAGGGCCATGGAAAAATGCAAAAGCAGAAGCTGA 750 0.5173 MASLNLRETELCLGLPGGVGGEAVEAAVTPKASGNKRAFSATVDLKLNLAADDSKDAAGEEEEDLTNQNHKNIASSNKNPIKPPAKAQVVGWPPVRSYRKNVMAQKVSSSEDGNTEEKTAAPPALATVGGSLVKVCMDGAPYLRKVDLKMYKSYQQLSDALAKMFSSFTMGKYEGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAMEKCKSRS 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1239g00012 249 FunFam Auxin-responsive protein 126 241 - -
Pral1239g00012 249 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 236 IPR003311 GO:0005634|GO:0006355
Pral1239g00012 249 ProSiteProfiles PB1 domain profile. 130 231 IPR000270 GO:0005515
Pral1239g00012 249 SUPERFAMILY CAD & PB1 domains 130 230 - -
Pral1239g00012 249 Pfam AUX/IAA family 8 240 IPR033389 -
Pral1239g00012 249 Gene3D - 126 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1239g00012 Pral-Chr1239 300359 303614 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1239g00012 131 239 B3 DNA Binding Superfamily AT4G23980 32.110 2.36e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pral1239g00012 AUX_IAA 3.6e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1239g00012 K14484 - mnt:21399382 322.783