LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral1236g00004	ATGGCACAACAAGTCGTTGAAATTTGCGGAAATGGAAACTTTAATACAGTTTCATATCGAGTTCCTCCCCCTGTGATCCCAGAATTAATCACCAGAGAAAGTAATGAAGGGATTGAATCAAGAGTGCCGGTTGTGAATCAAATTATGGAGGCATTGCGGAATCCTAATGTTAATATGATTGGATTGTGTGGACTTCCTGGTGTTGGCAAGACAACTACAGTTAAAGAGGTAGCAAAGAATAAAAACATGTTTGAAAAGGTGATCATGACAACCGTTTCTAAAGAATTGAACGTTGAGAAGATTCAAGGCCAGATTGCTGAGAAGCTGGGTTTGCAACTCAATGAAAAAACTGAAGATGTAAGAGCTGCTCGCCTATGTGTGAGGTTGAAGCAGGAGAAGAATATGCTCCTAATATTGGATGATCTTTGGGAGGAACTTGATTTGGGCAAAGTTGGAATTCCCTTTGTTGAAGGTTGCAAAATGTTACTAACTTCAAGGAATGAAATGTTGCTGTCAAAAGACATGAAATATCAAGAAATTATCAAAGTGGGTGTTTTGTTAGAGTATGAAGCATGGGAGTTGTTCAAGAGGATTGCTGAGCTTTCTGTTGACTCAAGTAGTCCTGAGTTGGCATCTATAGCCATTGCGATTGTTCGAAAGTGTGGTGGCCTGCCGCTAATGATTGCTACAGCTGCCAAGGCATTGAAGAATAAAGATCTAAATGAGTGGAAAGATGCCCTTGCACGATTGAATAATCCTTTGAGGAGAAACAACACATTAACTAAAGAGGTGGATACCATTTTGAAGTTGAGCTACAATCGTCTAAGCTCATCAGAGTACAAACATATTTTCTTGTTCGCTGCCATGTTGTCCCATGATCCCTCAATTGAAGACCTGCTCATGTGCTCTGTGGGGTTAGATTTTCTTAAGCACGTAGAAAACATGGAAGAAGCCCATGTTGGAATCGCTGCTATTGTAAGTAAGCTAAAATCATTAAACTTATTTCTTGATAGCTTTTCCAGTCATTATTTTACAATGCATGACGTCATCCGAGATGTTGCATTATCTATTGCATCATCCATGGAATTGTTTGCATTCATTGTGAAACATAGAAGGTTGAATGAATGGCCAGATGAAAACATGCTAAAAGGCTACAAGGGAATTTGCTTACAAGAGAGTGACATTAGTGACCTTCCTGATGAGTTGCATGGTCCACAATTGGAATTCTTTCTACCTATTGAATTGGCAGAGTTGACTTCTCTACAAATGTTGAATTTGTCCCATTGCTCTAAACTCAAAGTCATTCCACAAAATCTCCTATCTAGCTTGAAAAATTTGGAGGTTTTGCAAATGGGAAATAGCTTTGACCTGTGGAAAGTTGAAGGATCTGCTGAAGCTAATGAAAATGCAAGTCTTGACGAGTTGAAGGATTTGCCAATCTCCTCTCTAGATATTCATATCCCTAATGTCTCTATGTTGCCAGAAAACTTGTTCTTAGATATGAATTTGAAGAGATACAGGATATTCATTGGTGTTACTCCCAAAGTTGTAGACATTGGAATTATCCATTTTAAACCTTGTGGCATTGGGAAATTGCTGCCCCTTCATGTGCTGAAATCTTTAAACAACTTGGAAGAATTGGAAGTCAGGGACTGTGACTTGTTGGAGATGGTGTTTGACTTTGAAGATTTAAATGATGATAATGAGATGGTGCCATCATCCATTTGGGATAATCTAGAGATATTTGAAAAGCAAGGCTCAAGTTTATCAGAAATACATGAGGAAGAGAGCACACTAGACTCAAAATATCCTCTACTGTCCTATGACAAGGTTGATAATTTGGAGGAGTTAAGATTGTGGGGCAAAGAAGCTGAGATGATTGGGAGTGGCCAATTTCCAATGCACCGCTTCCCCAGAGTAAAACTTCTTTATCTTAATCCCATGGCACCAACAATAATTTCGTACAAATCATTGTGGGAGAGCTTTCCAAAACTAGATGAGCTGGAGCTGTGGGGTCGCATTAGGAGGGACGCTTTTGGAGGAGACGATGTTGCTGCATTTGCTGCTCCTTTTAGAAAATTGACTATCGGACTAGTCGATACACCATGTCTTGAAAGCGTTCAATTGTTACAAGATACGGGGAAACGTCAGCAATTTTGGGACACCAATCTTAACAAAACAATCTACCAACAGCAATTTGTCGCATCGGGAGTGCTGGTGTTAGATGAGAGTGACCAATTTCCAGTGGACCATAGTCCTAAAGTGGATATTCTTCGCATTGAAAGATTTGTCGATAAAATGATAACATTGCTTGAAAGATTTCCGCAGCTGAAAGCACTTCATGTGCAACATAGTTCCTTTGAGGAAATATTTCCATCACATGCACACATTGTTGATCATAAGGGAAAAATTCCGCTACCGAAGGAACTTTTGACGGTCCTGAAGGTGTCCAAATGTCACCAGCTTGTCTATTTAGTGACAAATTCAATGGCCAAAAGTTCAGTGAATCTTGAGACATTGGAGATGAATGACTGTAAAAAGATAGAAGAAATTGTAACGAAGCAAAAAGGAGAGGATGATGAGGATAAGGAAATCCTTTTCTGCAAACTGAAGTTTTTGAAACTTGATCAGGTTCCAGCATTGAAGAGATTTTGCAGCTACAATTATACTTTCAGGTTTCCATTATTGGATCAACAATTGGCATCAAGACAGGGGGTGTTAGACGAGAATGATGCTAACATCATATGGAATGACCAATTTCCAGTGGACCGTTATCCTCAAGTGGAAATTCTTCGCATAGAAAGATTTTTTGATGAATGGATAGCATTTCCAAAGATGGAGAAAATTGTAATCAATGAGACTAATGAAGATGTAGAAGGGAGAATCACATTCAATGCGTTGAGGATATTAAAACCCACTCTTCGACCAAGATTGAAAACAGAAGAGGATAAAACAGATTTCAACAGTGAGGACCGAGCAACAAATACCAGATGTAGAAGCATTTCAGATCACTTTTCAGCCGTCATAAGACTAGTCTTTTGGGATGGGCTCTCCCTTTGGGCTTATGCTCATCACATTGGTACTTTCGTTGAGAGTTGGCCAACCGAAAAAGGCTACCTGCGGAGGGTTCTGACCGGTAAGAAAAACCGAGTGAAGTGCCGTAGAGTGGAGCCACCGGGGACGTCGACTCTCAAAGGGGTGCTCTGTTATGAGTCCCACATTGGGAAATCTCACAAGTGTTGTGGAGTTCATAAGTTCAAGGGGCTCTCCCTCCCAATAGGCTAG	3285	0.4012	MAQQVVEICGNGNFNTVSYRVPPPVIPELITRESNEGIESRVPVVNQIMEALRNPNVNMIGLCGLPGVGKTTTVKEVAKNKNMFEKVIMTTVSKELNVEKIQGQIAEKLGLQLNEKTEDVRAARLCVRLKQEKNMLLILDDLWEELDLGKVGIPFVEGCKMLLTSRNEMLLSKDMKYQEIIKVGVLLEYEAWELFKRIAELSVDSSSPELASIAIAIVRKCGGLPLMIATAAKALKNKDLNEWKDALARLNNPLRRNNTLTKEVDTILKLSYNRLSSSEYKHIFLFAAMLSHDPSIEDLLMCSVGLDFLKHVENMEEAHVGIAAIVSKLKSLNLFLDSFSSHYFTMHDVIRDVALSIASSMELFAFIVKHRRLNEWPDENMLKGYKGICLQESDISDLPDELHGPQLEFFLPIELAELTSLQMLNLSHCSKLKVIPQNLLSSLKNLEVLQMGNSFDLWKVEGSAEANENASLDELKDLPISSLDIHIPNVSMLPENLFLDMNLKRYRIFIGVTPKVVDIGIIHFKPCGIGKLLPLHVLKSLNNLEELEVRDCDLLEMVFDFEDLNDDNEMVPSSIWDNLEIFEKQGSSLSEIHEEESTLDSKYPLLSYDKVDNLEELRLWGKEAEMIGSGQFPMHRFPRVKLLYLNPMAPTIISYKSLWESFPKLDELELWGRIRRDAFGGDDVAAFAAPFRKLTIGLVDTPCLESVQLLQDTGKRQQFWDTNLNKTIYQQQFVASGVLVLDESDQFPVDHSPKVDILRIERFVDKMITLLERFPQLKALHVQHSSFEEIFPSHAHIVDHKGKIPLPKELLTVLKVSKCHQLVYLVTNSMAKSSVNLETLEMNDCKKIEEIVTKQKGEDDEDKEILFCKLKFLKLDQVPALKRFCSYNYTFRFPLLDQQLASRQGVLDENDANIIWNDQFPVDRYPQVEILRIERFFDEWIAFPKMEKIVINETNEDVEGRITFNALRILKPTLRPRLKTEEDKTDFNSEDRATNTRCRSISDHFSAVIRLVFWDGLSLWAYAHHIGTFVESWPTEKGYLRRVLTGKKNRVKCRRVEPPGTSTLKGVLCYESHIGKSHKCCGVHKFKGLSLPIG	1094

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral1236g00004	1094	Gene3D	-	186	276	IPR042197	-
	Pral1236g00004	1094	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	34	286	IPR027417	-
	Pral1236g00004	1094	Pfam	NB-ARC domain	45	273	IPR002182	GO:0043531
	Pral1236g00004	1094	SUPERFAMILY	L domain-like	346	882	-	-
	Pral1236g00004	1094	Gene3D	-	21	184	IPR027417	-
	Pral1236g00004	1094	PRINTS	Disease resistance protein signature	129	143	-	-
	Pral1236g00004	1094	PRINTS	Disease resistance protein signature	59	74	-	-
	Pral1236g00004	1094	PRINTS	Disease resistance protein signature	221	235	-	-
	Pral1236g00004	1094	PRINTS	Disease resistance protein signature	416	432	-	-
	Pral1236g00004	1094	Gene3D	Ribonuclease Inhibitor	365	879	IPR032675	-
	Pral1236g00004	1094	PANTHER	NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED	2	903	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral1236g00004	Pral-Chr1236	112057	119929	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral1236g00004	56	357	WRKY Transcription Factor Family	AT5G45050	23.585	2.41e-06	50.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral1236g00004	-		-	pcin:129285257	496.508