Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1234g00001 ATGTCGAATCCTAAGCATCAGCGTGAGTCTCTGACTGCCAGTGTGGTCGATTCGTCCCTTCGGTATCACACTGCGAATGTTGCGGAATCAGATGGACAGTCCTCAATCAGAAGCACGAAGTCTTACCCGCCCGCAAACGCTCTCTATGAGGACCTCGCTAACAGTTCGGACCTTTTCTGGAAAAACCTTCAGGACTTCCACAAATCCTTGGGCGCCAGCTTAAAAGTTCCTACTATAGGAGGAAAGCAACTAGATCTATACCGCCTTTTTATTGAAGTCACTTCTCGTGGTGGGCTTGAAAAGGTAATTGGAGATCATAAATGGAAGGAAGTGGTTACAATCTTCAAATTCCCGAACACTGTAACAAGCGCATCATTTGCATTGCGTAAATACTATCAATCATTGCTTTATGACTTTGAGCAGGTTTATTATTTCCGGAAGCAAGTTCCTTCTTTTTCAAAACCTGATTCTGGTAGCAGGAGCATATTGACCTCAAAGGAAGGGGCTGCTTTGAGTGATTTACCAGCTAGTACGTTCGAGCAGCAGCTTGGCTCTTTGGTGCCTGGTACCATTGATTTGAAGTTTGATGGTGGATATGTAGTCACTGTGAATCTGGGTTCTGACCAGTTGAAAGGTGTGTTGTATCATGTTCCTCTCAATGGATCCCAGAGTTCTGCATCCATCCCTGCTTCTCAGAATCGAAAGAGATCAAGGTTGGGCTTGCATGATCCATCTCGGCCCAAATCAAACAGGAGTGGCTACAATTTCTTCTTTGCTGAACACTATGCCAGGCTAAAGCCTTCATACTATGGGCAAGAGAGGGCAATTAGTAAGAAGATTGGGTTTTTATGGAACCATCTCACTGAAGCAGAAAGACAGATTTACCAGGAGAAAGGAAGGAGAGATAAGGAGAGATACAGGACTGAGATGGAGGAATACAAAGCCTCCAATAATTTGACTCCTCAGTAG 969 0.4458 MSNPKHQRESLTASVVDSSLRYHTANVAESDGQSSIRSTKSYPPANALYEDLANSSDLFWKNLQDFHKSLGASLKVPTIGGKQLDLYRLFIEVTSRGGLEKVIGDHKWKEVVTIFKFPNTVTSASFALRKYYQSLLYDFEQVYYFRKQVPSFSKPDSGSRSILTSKEGAALSDLPASTFEQQLGSLVPGTIDLKFDGGYVVTVNLGSDQLKGVLYHVPLNGSQSSASIPASQNRKRSRLGLHDPSRPKSNRSGYNFFFAEHYARLKPSYYGQERAISKKIGFLWNHLTEAERQIYQEKGRRDKERYRTEMEEYKASNNLTPQ 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1234g00001 322 SMART ARID_2 50 140 - -
Pral1234g00001 322 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 247 314 IPR009071 -
Pral1234g00001 322 Gene3D High mobility group box domain 230 320 IPR036910 -
Pral1234g00001 322 Gene3D - 33 158 IPR036431 GO:0003677
Pral1234g00001 322 ProSiteProfiles ARID domain profile. 53 144 IPR001606 GO:0003677
Pral1234g00001 322 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 34 317 - -
Pral1234g00001 322 Pfam HMG (high mobility group) box 247 314 IPR009071 -
Pral1234g00001 322 SUPERFAMILY HMG-box 235 316 IPR036910 -
Pral1234g00001 322 CDD ARID_HMGB9-like 55 140 IPR045303 GO:0003677
Pral1234g00001 322 Pfam ARID/BRIGHT DNA binding domain 57 140 IPR001606 GO:0003677
Pral1234g00001 322 SUPERFAMILY ARID-like 53 150 IPR036431 GO:0003677
Pral1234g00001 322 CDD HMG-box_AtHMGB9-like 247 313 - -
Pral1234g00001 322 SMART bright_3 54 145 IPR001606 GO:0003677
Pral1234g00001 322 MobiDBLite consensus disorder prediction 224 248 - -
Pral1234g00001 322 SMART hmgende2 246 315 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1234g00001 Pral-Chr1234 15799 22500 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1234g00001 33 317 ARID Transcription Factor Family AT3G13350 51.316 7.14e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pral1234g00001 ARID 1.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1234g00001 - - pcin:129299025 574.704