Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1231g00044 ATGGATCCTCCACTCATCAACGAGTCTACATTCTCCCACGCTAACCCTTCTGCGTATAGTCTCACCGAGATTTGGCCTTTCCCTGGGGACCACTCTGCCGGACCTGGATTGGGTCTCCGAATGCCCCATCTGCCTCACAACTTGGCCTCCTTTTCCAATAATTCCCTCCATCGAGATGGCTCAGCCGAGGAGTCCACCGTCACGGAGCAGAGCGTCGGCGGCGGAGGGAATCACAGGAAGAGGAAAGATGCCACCTCTGAGGACGAGTCCTCAAAGATGGTTTCCATGATTAGTGCCAATGATTTGAATGATCCTGGCAATAAACGGATAAAATTAGGAGCATCCAAGGATGAAAATGGTAGTCTGAAGGCTGAGGCAGACGCAAGTTCAGTAGCTGGTAGCAAGTCAGGTGAGCAGGGTACTAAACCTCCTGAGCCACCTAAGCCAGACTATATACACGTGAGAGCAAGAAGAGGCCAAGCTACTGATAGCCACAGTCTTGCAGAAAGAGCAAGAAGGGAAAAGATCAGCGAGAGGATGAAAATTCTACAAGATTTGGTCCCTGGATGTAACAAGGTAATTGGTAAAGCACTTGTCCTGGATGAGATAATCAATTATATTCAATCACTGCAGCGGCAGGTTGAGTTTCTTTCGATGAAGCTTGAAGCAGTTAATTCAAGAATGACCACAAGCCCCACTATTGAAGGGTTCCCTTCAAAGGATACACTTGACGTTGCTGGAATGATATTGGGATCACAAGCAGGCAGGACGTATGCTCAGGGAACACAACTCGGATGGCTGCAAATGCAGATAGGTGGCGGTTTCGAGAGAGCAACATAG 840 0.4881 MDPPLINESTFSHANPSAYSLTEIWPFPGDHSAGPGLGLRMPHLPHNLASFSNNSLHRDGSAEESTVTEQSVGGGGNHRKRKDATSEDESSKMVSMISANDLNDPGNKRIKLGASKDENGSLKAEADASSVAGSKSGEQGTKPPEPPKPDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMTTSPTIEGFPSKDTLDVAGMILGSQAGRTYAQGTQLGWLQMQIGGGFERAT 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1231g00044 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 210 IPR011598 GO:0046983
Pral1231g00044 279 Pfam Helix-loop-helix DNA-binding domain 164 211 IPR011598 GO:0046983
Pral1231g00044 279 CDD bHLH_AtBPE_like 150 228 - -
Pral1231g00044 279 MobiDBLite consensus disorder prediction 50 73 - -
Pral1231g00044 279 FunFam Basic helix-loop-helix transcription factor 157 230 - -
Pral1231g00044 279 SMART finulus 166 216 IPR011598 GO:0046983
Pral1231g00044 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 229 IPR036638 GO:0046983
Pral1231g00044 279 MobiDBLite consensus disorder prediction 75 89 - -
Pral1231g00044 279 MobiDBLite consensus disorder prediction 50 151 - -
Pral1231g00044 279 Gene3D - 157 234 IPR036638 GO:0046983
Pral1231g00044 279 Coils Coil 207 227 - -
Pral1231g00044 279 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 59 249 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1231g00044 Pral-Chr1231 205672 209119 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1231g00044 1 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 55.401 4.46e-86 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral1231g00044 HLH 2.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1231g00044 - - qsa:O6P43_030937 393.66