Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral1231g00030 | ATGGGGCATAAAAAGCGAAACCCTGCCCCACGTTCCAAACAATCTGTGGCGGCTTCTCCGGTGACACAATCTGCCATCGGCGGAGCCGCCAATGGCCCTACTTCAGCCGAGTCAGAGCTGTGCATGAGTTCTAATGACACTATTCAAAGCGCGACCAAGATCGAGCTGTCTCCTCAACCCGAGCCTTCGGTTTACTCCACAATCAAGCTTGAATGTGAACGGGCCCTCAATGCGCTCAGACGTGGTAATCACACTAAGGCACTGAGGCTTATGAAGGAGTCATGCTCCAGACATGACGGCTCCGCTTACTCTGCCTTGATTCATCGAGTTCAGGGTACCGTATGTGTCAAAGTGGCCTCAATTATTGATGACCCAAGTGCGAAGCAAAGACATTTGAAGAATGCAATTGAGTCTGCGCGAAGAGCCGTTGAGCTATCGCCCAGTTCTGTTGAGTTTGCCCATTTTTATGCAAATTTGTTATACGAGGCAGCAAATGATTCGACCGAATACGAGCAGGTGGTGAAGGAGTGTGAAAGGGCACTCGGGATTCCAAATCCAATTGATCCTGCAAAGGAGAGCTTGCAGGATGAGAGCCAGCAGAAAATATCAACCCCTGACGCCCGTATAGCTCATGTCCAGAATGAGTTGCGGCAGCTAATTCAGAAGTCAAACATAGCTTCCTTATCAACGTGGATGAAAAATCTGGGTAATGGGGAGGAGAAATTCCGTTTGATTCCAATACGGAGGGCAACAGAGGACCCAATGGAGGCGAGGTTGGTTCAAACTAGAAGGCCAAATGAGATAAAAAAGGTGACCAAGACTCCCGATGAGAGAAGAAAAGAAATTGAAGTTCGAGTTGCTGCTGCAAGGCTATTGCAGCAAAAGTCAGAGTCACCCCAATCCCAGAACCAAGGGGAGAGGGATGGCAGGACAGTGGATTCATCTTCAGGATCTGGGCAGAGGATCAGTGAGAGGCGGAAGCATGGTCATGTCCGAAAAGCTGGCTCTACATCTGAAAGGAGAGATTGGGTTCGTTTATATTGGAATTTGATGAGTATTGATTTGAAGAGGGAGTTCCTTAGGATTAGGGTATGTGATCTCAAATCTCACTTTGGGTCTTCAAAGGATGCTTTGCTGAATGACATTGTAGCAGAAGCTTTGTCGTATGCTGAGGCCAACAAAACATGGAGATTTTGGCTTTGCTGCCGCTGTGGTGAGAAGTTTTCAGATTCGGAGTCTCACATGCAGCATGTTGTGCAGGAACACATGGGGAATCTTTTACCTAAAATGCAAAGACTTTTGCCTCAAAATGTTGACAACGAATGGATTGAGTTGATATCTAAGTGTTCTTGGAAACCTCTAGATGCATGTGCTGCTGTGAAAATGCTTGAAAGTCAAGCAAAATGTGATGATTTTTCATTTCCTGAGGATTCCTATGTGGATCATATCGAGGAGCACCATGATTGCTTTAAAGACTCTAATTATTTTTTGCCTAAAAGGGGACATGACCTTGGTAGCTGTACACCAGATAGAAGTAACTGTTATAAATCTGAGGAAACTGGTATTGCAGATGGTGTTGAAGTTGAACGGTCTGTAGCATATTCCCATTCTGATGGTTGGCCATTGTCAGATGACTCTGAGCGTGCAAAGCTTCTTGAGAAAATTCATGCAGTACTTGATATGCTTATTAGACACAAATATCTTGCTGCTAGTCATCTTGGCAAGGTCATACAGTTTACCATGGATGAGATACAGGGACTTGCTGCTGGATCTCAGCTTTTGAACCATGGTTTAGACCAATCACCAACGTGCATATGCTTTTTGGGAGCCCCACAACTCAAGAAAATTCTCAAATTTTTGCAGGAGCTGTCTCATGCTTGTGGTTTGGGCAGATATGTTGATAAAAGTATTAGTCCCATGGATGATTTACACAATTCAAATCAAATTCCCGAGATTAAAGAGAAGATTGTTCTCAATGGAGATGCATCATGCCTTCTTCTAGATGAATGTTTAGTGCCTGCAGAAATCACTCCTAGTGCTACTAAGAGTGCTGCATTGGATGATGTGACTACCCCGACCTCTAATGATGTTGCTTCACACACCGATCCTTTCCTATCTTGGATATTTTCAGGTTCATCTTGTGGGGATCAATTGACTTTGTGGATGAGAACAAAAGAAGATAAAAGATGTCAAGGAATGGAACTTGTCCAGACTCTTGAGAAGGAGTTTTATCACCTACAGAGCCTTTCTGAGAAGAAATGTGAGCGAATGAATTATGAGGAAGCACTGCAGGTTGTAGAGGACCTTTGCCTAGAAGAAGGTAAGAAGAGGGAAAATTTCACCAAATTTGTTCAGCAAAGCTATGGATCTGTTTTGAGAAAGCGGAGAGAAGAGCTCATTGAGAGTGAAAATGATGTCATGTATGTTGGCAATAGATTTGAGTTGGATGCCATAACAAATGTTCTGCAAGAAGCAGAGGCAATGAATGTTAATCAATTTGGTTATGAGGAAAACTATACTGGTGTATGTGACGTGGAATCTGGTGAAGATGATGAATGGAGAATGAAAGACTATTTGCATCAAATGGATAGCTACATAGAAATAGCCATTCAGAAACTGAAGGAAAACCTATCTGTGGAGCTTAGCAAAATTGATGCACGGATCATGAGAAATGTTACAGAGATGCAGCAGTTGGAACTGAAGCTTGAGCCTGTTTCTGCTTTTGATTATCGTGCAATATTACTTCCTCTAGTGAAGTCGCACCTAAGGGCACGTTTGGAAGATTTGGCTGAGAAAGACGCAACGGAGAAGTCTGATGCAGCACGAGAAGCATTTTTGGCTGAGCTTGCTCTTGATTCAAAGAGGGGCTCTAAAGGGGGAAGTGATAGTGCGAAACATATGGAGAAAACAAAAGATAAGAAGAAAAATAAAGAAAACAGAAAAACAAGGGATTTGAAGGCTACATATGGTCATGAGCCGCACAATGTTGACACCACTACTCCCGATTCCTATTCCCTTGAGCGTGATAAGGACCATGATTCCATTCCTGTTTCTACGATTAGTGTTGACTTGGAACAACAGGAAGAGGAAGTTAGACGTAAAATTGAGTTAGAAGAAGAGGAAAAAAAACTTGAAGAAACTTTGGAGTTACAACGTCGAATAGAAAATGAGGCTAAACTGAAGCACCTTGCTGAGCAACAAAAAAAATCCTCTGGGACATATTTGGAGAAGCCGGCTGACAAAGTTCTGGATTGTCAATTAAAGGCCGTTGCTGATGGCCTAGAAAGACCGCCCATGCTGTTAGCAAATGAGAATGCTTACCCTCGCAATTTAGATGGTGTGCTTATTGCCACATCAAATGGTTCTGCAGTTCCAAACAAATCTTTACTTGATTCAGTGAATCAAACGATTCATCATATGGACCCATCAAATATTAGGCAAGCAGATCTGTCTAACAAAGTAGTTCCTGAGAATGGTTTTCACTTGGCTGAGCCGCGTACAGGGAAAAAGGGTAAACGCCATAGAAATGCTTCCAGGTTGGCTGATGGAAAGTTTGAGGCTGTCTCATCGGATAAAGAGAATGTTGGTGCACATGCTGATAACCATTTAAGAGAGCATGTTAAATTCCACAGCAATCAGGATGCTAACGACGTGCAAGGAGACAATGAATCAATGACTCTGAAAGAGTTGCAAGTGGAGCATGATGAGGAGGAAAGGTTCCAAGCTGACCTAAAAATAGCTGTACGCCAAAGTCTGGACACATATCAAGCTCTTCAAAAATTGCCTCCAGATTCTAGATTGAGAACGCCAGATAGAGCTTCTTCGCAAGTAGATAATTTTGGTGCTCCACTGGAGGAGAACACAACTGAGAATGTCAATGGAGGTAGTTTGCTTGGTGCCGGGTTGAAGAATGAAGTGGGTGAATATAATTGCTTTCTCAATGTTATAATACAATCTTTGTGGCATTTGCAACGTTTTCGTGAGGAGTTTCTTAGCAGATCAAGATCAGAGCATGATCATGTGGGTAATCCTTGCGTTGTGTGTGCATTGTATGATATCTTCGCTGCCATGGGAATTGCGTCAAAGGATTGCAGGGGAGAAGCTGTAGCCCCTACTTCTCTGAGAATAGCTCTAAGCAATCTATGTCCAGATAGTAACTTCTTTCAGGAGGCTCAGATGAATGATGCTTCTGAAGTACTGGCAGTGGTATTTGACTGCCTTCACCGATCATTTACTCGTGGTTCAAGTGTTTCTGATACAGAATCAGTGGAAAGCAACTCCATGGGATCTTGGGATTGTGCAAACAGTAGTTGTATAGCACATTCACTCTTTGGAATGGATATTTTTGAACGGATGAACTGCCATCACTGTGGTCTTGAGTCCAGGCATCTGAAGTATACTTCCTTCTTCCATAATATAAATGCCAACTCCCTTCGGACCATGAAGGTAATGTGTAGTGAAAGCTCCTTTGATGAGCTTTTGAATGTAGTGGAGATGAATCATCAGTTAGCTTGTGATCCAGAAGCTGGCGGCTGTGGCAAGCTAAATTACATCCATCATTTTCTTTCAAAACCACCTCATGTTTTCACAACTGTTCTAGGTTGGCAAAATACATGCGAGAGTGCTGATGATATTAAAGCAACTTTGGCAACGCTGAGCACCAAGATGGACGTCAGTGTTCTTTATCGTGGGTTAGACCCAAAAAGCATTCATAGCTTGGTTTCCGTGGTATGCTACTATGGGCAACACTATCATTGCTTTGCTTATAGCCATGAACATGAGCAATGGATTATGTATGATGATAAGACAGTCAAGATAATTGGTGGGTGGCTTGATGTTCTTGCAATGTGTGAAAGAGGGCATCTACAACCTCAGGTTCTTTTCTTTGAAGATGTAAACTAA | 4902 | 0.4292 | MGHKKRNPAPRSKQSVAASPVTQSAIGGAANGPTSAESELCMSSNDTIQSATKIELSPQPEPSVYSTIKLECERALNALRRGNHTKALRLMKESCSRHDGSAYSALIHRVQGTVCVKVASIIDDPSAKQRHLKNAIESARRAVELSPSSVEFAHFYANLLYEAANDSTEYEQVVKECERALGIPNPIDPAKESLQDESQQKISTPDARIAHVQNELRQLIQKSNIASLSTWMKNLGNGEEKFRLIPIRRATEDPMEARLVQTRRPNEIKKVTKTPDERRKEIEVRVAAARLLQQKSESPQSQNQGERDGRTVDSSSGSGQRISERRKHGHVRKAGSTSERRDWVRLYWNLMSIDLKREFLRIRVCDLKSHFGSSKDALLNDIVAEALSYAEANKTWRFWLCCRCGEKFSDSESHMQHVVQEHMGNLLPKMQRLLPQNVDNEWIELISKCSWKPLDACAAVKMLESQAKCDDFSFPEDSYVDHIEEHHDCFKDSNYFLPKRGHDLGSCTPDRSNCYKSEETGIADGVEVERSVAYSHSDGWPLSDDSERAKLLEKIHAVLDMLIRHKYLAASHLGKVIQFTMDEIQGLAAGSQLLNHGLDQSPTCICFLGAPQLKKILKFLQELSHACGLGRYVDKSISPMDDLHNSNQIPEIKEKIVLNGDASCLLLDECLVPAEITPSATKSAALDDVTTPTSNDVASHTDPFLSWIFSGSSCGDQLTLWMRTKEDKRCQGMELVQTLEKEFYHLQSLSEKKCERMNYEEALQVVEDLCLEEGKKRENFTKFVQQSYGSVLRKRREELIESENDVMYVGNRFELDAITNVLQEAEAMNVNQFGYEENYTGVCDVESGEDDEWRMKDYLHQMDSYIEIAIQKLKENLSVELSKIDARIMRNVTEMQQLELKLEPVSAFDYRAILLPLVKSHLRARLEDLAEKDATEKSDAAREAFLAELALDSKRGSKGGSDSAKHMEKTKDKKKNKENRKTRDLKATYGHEPHNVDTTTPDSYSLERDKDHDSIPVSTISVDLEQQEEEVRRKIELEEEEKKLEETLELQRRIENEAKLKHLAEQQKKSSGTYLEKPADKVLDCQLKAVADGLERPPMLLANENAYPRNLDGVLIATSNGSAVPNKSLLDSVNQTIHHMDPSNIRQADLSNKVVPENGFHLAEPRTGKKGKRHRNASRLADGKFEAVSSDKENVGAHADNHLREHVKFHSNQDANDVQGDNESMTLKELQVEHDEEERFQADLKIAVRQSLDTYQALQKLPPDSRLRTPDRASSQVDNFGAPLEENTTENVNGGSLLGAGLKNEVGEYNCFLNVIIQSLWHLQRFREEFLSRSRSEHDHVGNPCVVCALYDIFAAMGIASKDCRGEAVAPTSLRIALSNLCPDSNFFQEAQMNDASEVLAVVFDCLHRSFTRGSSVSDTESVESNSMGSWDCANSSCIAHSLFGMDIFERMNCHHCGLESRHLKYTSFFHNINANSLRTMKVMCSESSFDELLNVVEMNHQLACDPEAGGCGKLNYIHHFLSKPPHVFTTVLGWQNTCESADDIKATLATLSTKMDVSVLYRGLDPKSIHSLVSVVCYYGQHYHCFAYSHEHEQWIMYDDKTVKIIGGWLDVLAMCERGHLQPQVLFFEDVN | 1633 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral1231g00030 | 1633 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 401 | 422 | IPR013087 | - | |
| Pral1231g00030 | 1633 | MobiDBLite | consensus disorder prediction | 291 | 335 | - | - | |
| Pral1231g00030 | 1633 | Coils | Coil | 749 | 769 | - | - | |
| Pral1231g00030 | 1633 | PANTHER | UBIQUITIN SPECIFIC PROTEINASE | 1 | 1632 | - | - | |
| Pral1231g00030 | 1633 | Gene3D | Tetratricopeptide repeat domain | 54 | 220 | IPR011990 | GO:0005515 | |
| Pral1231g00030 | 1633 | Gene3D | Cysteine proteinases | 1283 | 1631 | - | - | |
| Pral1231g00030 | 1633 | Coils | Coil | 1021 | 1057 | - | - | |
| Pral1231g00030 | 1633 | SUPERFAMILY | Cysteine proteinases | 1300 | 1615 | IPR038765 | - | |
| Pral1231g00030 | 1633 | ProSiteProfiles | Ubiquitin specific protease (USP) domain profile. | 1300 | 1632 | IPR028889 | - | |
| Pral1231g00030 | 1633 | MobiDBLite | consensus disorder prediction | 293 | 319 | - | - | |
| Pral1231g00030 | 1633 | MobiDBLite | consensus disorder prediction | 954 | 1015 | - | - | |
| Pral1231g00030 | 1633 | Pfam | Ubiquitin carboxyl-terminal hydrolase | 1309 | 1607 | IPR001394 | GO:0004843|GO:0016579 | |
| Pral1231g00030 | 1633 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
| Pral1231g00030 | 1633 | Pfam | Protein of unknown function (DUF627) | 74 | 183 | IPR006866 | - | |
| Pral1231g00030 | 1633 | MobiDBLite | consensus disorder prediction | 12 | 41 | - | - | |
| Pral1231g00030 | 1633 | Pfam | Protein of unknown function (DUF629) | 344 | 867 | IPR006865 | - | |
| Pral1231g00030 | 1633 | CDD | Peptidase_C19 | 1391 | 1630 | - | - | |
| Pral1231g00030 | 1633 | MobiDBLite | consensus disorder prediction | 958 | 991 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral1231g00030 | Pral-Chr1231 | 128141 | 137296 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral1231g00030 | 60 | 1630 | C2H2 Transcription Factor Family | AT3G47890 | 57.842 | 0.0 | 1749 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral1231g00030 | - | - | adu:107493676 | 2189.85 |