LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral1231g00028	ATGGGGCATAAAAAGCGAAACCCTGCCCCACGTTCCAAACAATCTGTGGCGGCTTCTCCGGTGACACAATCTGCCATCGGCGGAGCCGCCAATGGCCCTACTTCAGCCGAGTCAGAGCTGTGCATGAGTTCTAATGACACTATTCAAAGCGCGACCAAGATCGAGCTGTCTCCTCAACCCGAGCCTTCGGTTTACTCCACAATCAAGCTTGAATGTGAACGGGCCCTCAATGCGCTCAGACGTGGTAATCACACTAAGGCACTGAGGCTTATGAAGGAGTCATGCTCCAGACATGACGGCTCCGCTTACTCTGCCTTGATTCATCGAGTTCAGGGTACCGTATGTGTCAAAGTGGCCTCAATTATTGATGACCCAAGTGCGAAGCAAAGACATTTGAAGAATGCAATTGAGTCTGCGCGAAGAGCCGTTGAGCTATCGCCCAGTTCTGTTGAGTTTGCCCATTTTTATGCAAATTTGTTATACGAGGCAGCAAATGATTCGACCGAATACGAGCAGGTGGTGAAGGAGTGTGAAAGGGCACTCGGGATTCCAAATCCAATTGATCCTGCAAAGGAGAGCTTGCAGGATGAGAGCCAGCAGAAAATATCAACCCCTGACGCCCGTATAGCTCATGTCCAGAATGAGTTGCGGCAGCTAATTCAGAAGTCAAACATAGCTTCCTTATCAACGTGGATGAAAAATCTGGGTAATGGGGAGGAGAAATTCCGTTTGATTCCAATACGGAGGGCAACAGAGGACCCAATGGAGGCGAGGTTGGTTCAAACTAGAAGGCCAAATGAGATAAAAAAGGTGACCAAGACTCCCGATGAGAGAAGAAAAGAAATTGAAGTTCGAGTTGCTGCTGCAAGGCTATTGCAGCAAAAGTCAGAGTCACCCCAATCCCAGAACCAAGGGGAGAGGGATGGCAGGACAGTGGATTCATCTTCAGGATCTGGGCAGAGGATCAGTGAGAGGCGGAAGCATGGTCATGTCCGAAAAGCTGGCTCTACATCTGAAAGGAGAGATTGGGTTCGTTTATATTGGAATTTGATGAGTATTGATTTGAAGAGGGAGTTCCTTAGGATTAGGGTATGTGATCTCAAATCTCACTTTGGGTCTTCAAAGGATGCTTTGCTGAATGACATTGTAGCAGAAGCTTTGTCGTATGCTGAGGCCAACAAAACATGGAGATTTTGGCTTTGCTGCCGCTGTGGTGAGAAGTTTTCAGATTCGGAGTCTCACATGCAGCATGTTGTGCAGGAACACATGGGGAATCTTTTACCTAAAATGCAAAGACTTTTGCCTCAAAATGTTGACAACGAATGGATTGAGTTGATATCTAAGTGTTCTTGGAAACCTCTAGATGCATGTGCTGCTGTGAAAATGCTTGAAAGTCAAGCAAAATGTGATGATTTTTCATTTCCTGAGGATTCCTATGTGGATCATATCGAGGAGCACCATGATTGCTTTAAAGACTCTAATTATTTTTTGCCTAAAAGGGGACATGACCTTGGTAGCTGTACACCAGATAGAAGTAACTGTTATAAATCTGAGGAAACTGGTATTGCAGATGGTGTTGAAGTTGAACGGTCTGTAGCATATTCCCATTCTGATGGTTGGCCATTGTCAGATGACTCTGAGCGTGCAAAGCTTCTTGAGAAAATTCATGCAGTACTTGATATGCTTATTAGACACAAATATCTTGCTGCTAGTCATCTTGGCAAGGTCATACAGTTTACCATGGATGAGATACAGGGACTTGCTGCTGGATCTCAGCTTTTGAACCATGGTTTAGACCAATCACCAACGTGCATATGCTTTTTGGGAGCCCCACAACTCAAGAAAATTCTCAAATTTTTGCAGGAGCTGTCTCATGCTTGTGGTTTGGGCAGATATGTTGATAAAAGTATTAGTCCCATGGATGATTTACACAATTCAAATCAAATTCCCGAGATTAAAGAGAAGATTGTTCTCAATGGAGATGCATCATGCCTTCTTCTAGATGAATGTTTAGTGCCTGCAGAAATCACTCCTAGTGCTACTAAGAGTGCTGCATTGGATGATGTGACTACCCCGACCTCTAATGATGTTGCTTCACACACCGATCCTTTCCTATCTTGGATATTTTCAGGTTCATCTTGTGGGGATCAATTGACTTTGTGGATGAGAACAAAAGAAGATAAAAGATGTCAAGGAATGGAACTTGTCCAGACTCTTGAGAAGGAGTTTTATCACCTACAGAGCCTTTCTGAGAAGAAATGTGAGCGAATGAATTATGAGGAAGCACTGCAGGTTGTAGAGGACCTTTGCCTAGAAGAAGGTAAGAAGAGGGAAAATTTCACCAAATTTGTTCAGCAAAGCTATGGATCTGTTTTGAGAAAGCGGAGAGAAGAGCTCATTGAGAGTGAAAATGATGTCATGTATGTTGGCAATAGATTTGAGTTGGATGCCATAACAAATGTTCTGCAAGAAGCAGAGGCAATGAATGTTAATCAATTTGGTTATGAGGAAAACTATACTGGTGTATGTGACGTGGAATCTGGTGAAGATGATGAATGGAGAATGAAAGACTATTTGCATCAAATGGATAGCTACATAGAAATAGCCATTCAGAAACTGAAGGAAAACCTATCTGTGGAGCTTAGCAAAATTGATGCACGGATCATGAGAAATGTTACAGAGATGCAGCAGTTGGAACTGAAGCTTGAGCCTGTTTCTGCTTTTGATTATCGTGCAATATTACTTCCTCTAGTGAAGTCGCACCTAAGGGCACGTTTGGAAGATTTGGCTGAGAAAGACGCAACGGAGAAGTCTGATGCAGCACGAGAAGCATTTTTGGCTGAGCTTGCTCTTGATTCAAAGAGGGGCTCTAAAGGGGGAAGTGATAGTGCGAAACATATGGAGAAAACAAAAGATAAGAAGAAAAATAAAGAAAACAGAAAAACAAGGGATTTGAAGGCTACATATGGTCATGAGCCGCACAATGTTGACACCACTACTCCCGATTCCTATTCCCTTGAGCGTGATAAGGACCATGATTCCATTCCTGTTTCTACGATTAGTGTTGACTTGGAACAACAGGAAGAGGAAGTTAGACGTAAAATTGAGTTAGAAGAAGAGGAAAAAAAACTTGAAGAAACTTTGGAGTTACAACGTCGAATAGAAAATGAGGCTAAACTGAAGCACCTTGCTGAGCAACAAAAAAAATCCTCTGGGACATATTTGGAGAAGCCGGCTGACAAAGTTCTGGATTGTCAATTAAAGGCCGTTGCTGATGGCCTAGAAAGACCGCCCATGCTGGAGCAGTTAGCAAATGAGAATGCTTACCCTCGCAATTTAGATGGTGTGCTTATTGCCACATCAAATGGTTCTGCAGTTCCAAACAAATCTTTACTTGATTCAGTGAATCAAACGATTCATCATATGGACCCATCAAATATTAGGCAAGCAGATCTGTCTAACAAAGTAGTTCCTGAGAATGGTTTTCACTTGGCTGAGCCGCGTACAGGGAAAAAGGGTAAACGCCATAGAAATGCTTCCAGGTTGGCTGATGGAAAGTTTGAGGCTGTCTCATCGGATAAAGAGAATGTTGGTGCACATGCTGATAACCATTTAAGAGAGCATGTTAAATTCCACAGCAATCAGGATGCTAACGACGTGCAAGGAGACAATGAATCAATGACTCTGAAAGAGTTGCAAGTGGAGCATGATGAGGAGGAAAGGTTCCAAGCTGACCTAAAAATAGCTGTACGCCAAAGTCTGGACACATATCAAGCTCTTCAAAAATTGCCTCCAGATTCTAGATTGAGAACGCCAGATAGAGCTTCTTCGCAAGTAGATAATTTTGGTGCTCCACTGGAGGAGAACACAACTGAGAATGTCAATGGAGGTAGTTTGCTTGGTGCCGGGTTGAAGAATGAAGTGGGTGAATATAATTGCTTTCTCAATGTTATAATACAATCTTTGTGGCATTTGCAACGTTTTCGTGAGGAGTTTCTTAGCAGATCAAGATCAGAGCATGATCATGTGGGTAATCCTTGCGTTGTGTGTGCATTGTATGATATCTTCGCTGCCATGGGAATTGCGTCAAAGGATTGCAGGGGAGAAGCTGTAGCCCCTACTTCTCTGAGAATAGCTCTAAGCAATCTATGTCCAGATAGTAACTTCTTTCAGGAGGCTCAGATGAATGATGCTTCTGAAGTACTGGCAGTGGTATTTGACTGCCTTCACCGATCATTTACTCGTGGTTCAAGTGTTTCTGATACAGAATCAGTGGAAAGCAACTCCATGGGATCTTGGGATTGTGCAAACAGTAGTTGTATAGCACATTCACTCTTTGGAATGGATATTTTTGAACGGATGAACTGCCATCACTGTGGTCTTGAGTCCAGGCATCTGAAGTATACTTCCTTCTTCCATAATATAAATGCCAACTCCCTTCGGACCATGAAGGTAATGTGTAGTGAAAGCTCCTTTGATGAGCTTTTGAATGTAGTGGAGATGAATCATCAGTTAGCTTGTGATCCAGAAGCTGGCGGCTGTGGCAAGCTAAATTACATCCATCATTTTCTTTCAAAACCACCTCATGTTTTCACAACTGTTCTAGGTTGGCAAAATACATGCGAGAGTGCTGATGATATTAAAGCAACTTTGGCAACGCTGAGCACCAAGATGGACGTCAGTGTTCTTTATCGTGGGTTAGACCCAAAAAGCATTCATAGCTTGGTTTCCGTGGTATGCTACTATGGGCAACACTATCATTGCTTTGCTTATAGCCATGAACATGAGCAATGGATTATGTATGATGATAAGACAGTCAAGATAATTGGTGGGTGGCTTGATGTTCTTGCAATGTGTGAAAGAGGGCATCTACAACCTCAGGTTCTTTTCTTTGAAGATGTAAACTAA	4908	0.4295	MGHKKRNPAPRSKQSVAASPVTQSAIGGAANGPTSAESELCMSSNDTIQSATKIELSPQPEPSVYSTIKLECERALNALRRGNHTKALRLMKESCSRHDGSAYSALIHRVQGTVCVKVASIIDDPSAKQRHLKNAIESARRAVELSPSSVEFAHFYANLLYEAANDSTEYEQVVKECERALGIPNPIDPAKESLQDESQQKISTPDARIAHVQNELRQLIQKSNIASLSTWMKNLGNGEEKFRLIPIRRATEDPMEARLVQTRRPNEIKKVTKTPDERRKEIEVRVAAARLLQQKSESPQSQNQGERDGRTVDSSSGSGQRISERRKHGHVRKAGSTSERRDWVRLYWNLMSIDLKREFLRIRVCDLKSHFGSSKDALLNDIVAEALSYAEANKTWRFWLCCRCGEKFSDSESHMQHVVQEHMGNLLPKMQRLLPQNVDNEWIELISKCSWKPLDACAAVKMLESQAKCDDFSFPEDSYVDHIEEHHDCFKDSNYFLPKRGHDLGSCTPDRSNCYKSEETGIADGVEVERSVAYSHSDGWPLSDDSERAKLLEKIHAVLDMLIRHKYLAASHLGKVIQFTMDEIQGLAAGSQLLNHGLDQSPTCICFLGAPQLKKILKFLQELSHACGLGRYVDKSISPMDDLHNSNQIPEIKEKIVLNGDASCLLLDECLVPAEITPSATKSAALDDVTTPTSNDVASHTDPFLSWIFSGSSCGDQLTLWMRTKEDKRCQGMELVQTLEKEFYHLQSLSEKKCERMNYEEALQVVEDLCLEEGKKRENFTKFVQQSYGSVLRKRREELIESENDVMYVGNRFELDAITNVLQEAEAMNVNQFGYEENYTGVCDVESGEDDEWRMKDYLHQMDSYIEIAIQKLKENLSVELSKIDARIMRNVTEMQQLELKLEPVSAFDYRAILLPLVKSHLRARLEDLAEKDATEKSDAAREAFLAELALDSKRGSKGGSDSAKHMEKTKDKKKNKENRKTRDLKATYGHEPHNVDTTTPDSYSLERDKDHDSIPVSTISVDLEQQEEEVRRKIELEEEEKKLEETLELQRRIENEAKLKHLAEQQKKSSGTYLEKPADKVLDCQLKAVADGLERPPMLEQLANENAYPRNLDGVLIATSNGSAVPNKSLLDSVNQTIHHMDPSNIRQADLSNKVVPENGFHLAEPRTGKKGKRHRNASRLADGKFEAVSSDKENVGAHADNHLREHVKFHSNQDANDVQGDNESMTLKELQVEHDEEERFQADLKIAVRQSLDTYQALQKLPPDSRLRTPDRASSQVDNFGAPLEENTTENVNGGSLLGAGLKNEVGEYNCFLNVIIQSLWHLQRFREEFLSRSRSEHDHVGNPCVVCALYDIFAAMGIASKDCRGEAVAPTSLRIALSNLCPDSNFFQEAQMNDASEVLAVVFDCLHRSFTRGSSVSDTESVESNSMGSWDCANSSCIAHSLFGMDIFERMNCHHCGLESRHLKYTSFFHNINANSLRTMKVMCSESSFDELLNVVEMNHQLACDPEAGGCGKLNYIHHFLSKPPHVFTTVLGWQNTCESADDIKATLATLSTKMDVSVLYRGLDPKSIHSLVSVVCYYGQHYHCFAYSHEHEQWIMYDDKTVKIIGGWLDVLAMCERGHLQPQVLFFEDVN	1635

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral1231g00028	1635	ProSiteProfiles	Ubiquitin specific protease (USP) domain profile.	1302	1634	IPR028889	-
	Pral1231g00028	1635	ProSitePatterns	Zinc finger C2H2 type domain signature.	401	422	IPR013087	-
	Pral1231g00028	1635	MobiDBLite	consensus disorder prediction	291	335	-	-
	Pral1231g00028	1635	Coils	Coil	749	769	-	-
	Pral1231g00028	1635	Gene3D	Cysteine proteinases	1285	1633	-	-
	Pral1231g00028	1635	Pfam	Ubiquitin carboxyl-terminal hydrolase	1311	1609	IPR001394	GO:0004843\|GO:0016579
	Pral1231g00028	1635	Coils	Coil	1021	1057	-	-
	Pral1231g00028	1635	MobiDBLite	consensus disorder prediction	293	319	-	-
	Pral1231g00028	1635	MobiDBLite	consensus disorder prediction	954	1015	-	-
	Pral1231g00028	1635	MobiDBLite	consensus disorder prediction	1	41	-	-
	Pral1231g00028	1635	PANTHER	UBIQUITIN SPECIFIC PROTEINASE	1	1634	-	-
	Pral1231g00028	1635	CDD	Peptidase_C19	1393	1632	-	-
	Pral1231g00028	1635	SUPERFAMILY	Cysteine proteinases	1302	1617	IPR038765	-
	Pral1231g00028	1635	Pfam	Protein of unknown function (DUF627)	74	183	IPR006866	-
	Pral1231g00028	1635	Gene3D	Tetratricopeptide repeat domain	54	220	IPR011990	GO:0005515
	Pral1231g00028	1635	MobiDBLite	consensus disorder prediction	12	41	-	-
	Pral1231g00028	1635	Pfam	Protein of unknown function (DUF629)	344	867	IPR006865	-
	Pral1231g00028	1635	MobiDBLite	consensus disorder prediction	958	991	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral1231g00028	Pral-Chr1231	127760	137296	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral1231g00028	60	1632	C2H2 Transcription Factor Family	AT3G47890	57.625	0.0	1750

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral1231g00028	-		-	adu:107493676	2198.7