Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1229g00003 ATGCCTGAAAATCCATGGACCCTCTTCTTCCTAGTAGCTGCACTTTTGCTTCATTCCCAATGTTCTTTTATTGTTTCTGCTGTGAACCCACAAGGGCAAGCTCTTCTTTCATGGAAGACGTCCCTGAACAGGTCCTTGGAGGTGCTGAGTAATTGGGACCCAGTTGACAATACACCATGTGGCTGGTTTGGAGTTAGCTGCAACTTCAAGAACGAGGTTGTGCAATTAGATCTGAGGTATGTTGATCTGCTTGGAAGCCTTCCTTCTAATTTCACCTCCCTGAGTTCCTTGACTAAGCTTATCCTTATTGGAACGAACCTCACTGGTTCTATCCCAAAAGAGATAGGCTTTCTTAGCAATCTCACCTACTTGGACTTGAGTGACAATGCCTTGACCGGTGAGATCCCAAGTGAGCTTTGCTTTTTGCCTGAGCTTCAAGAACTTCATCTGAACTCCAACCAGCTTGAAGGGTCTATTCCAATTGCAATTGGGAATCTCACGAAGTTGGAGTGGCTGATCTTATATGATAATCAGCTAAGTGGTGAAATTCCCCCAACGATTGGCAATCTGAATACTCTGCAAGTGATTCGAGCTGGTGGAAACAAGAACCTTGAGGGTGCTTTGCCTCGAGAAATAGGAAACTGTTCCAAGTTGGTCATGTTGGGTTTAGCTGAAACAAGTATCTCAGGATTTCTTCCTCCAACCCTTGGCCTCCTCAAGAAGCTAAACACTATTGCAATTTACACTTCCCTCCTCTCTGGTCAGATTCCTCCTGAACTCGGTGACTGCACTGAACTTGAGAACATTTATTTGTACGAGAACTCCCTCACTGGATCATTACCTAGCAGATTGGGAAATCTTAGGAATCTCAAGAATCTTCTTTTGTGGCAGAACAATTTAGTTGGCACCATCCCATGGGAAATTGGAAATTGCTACCAGTTTTCTGTCATTGACATCTCAATGAACTCGCTTACAGGAAGCATTCCCAAGAGTTTCGGGAATTTAACTGCTTTGGAAGAACTTCAACTTAGCGAAAACCAAATTTCAGGGGAGATTCCTGCAGAGCTGGGGAACTGCGAGCAACTCACTCACATCGAGCTGGATAACAATCAAATCACGGGGACGATACCTTCCAAATTTGGAAACCTCAGGAATCTGACGTTGTTATTCCTGTGGCATAACAAGCTCGAAGGAAGCATACCATCTTCACTTTCCAATTGCCAAAACCTTGAGGCTGTGGATCTGTCACAGAACTCACTGACGGGTCCCATACCGAAGGGGATATTCGAGCTCAAGAATCTCAACAAGCTTTTGCTACTATCTAATAATCTCTCCGGAAATATTCCATCTGAAATTGGAAATTGTTCGTCTTTGATTCGGTTCCGAGTGAGCAAAAATAAGATCACAGGGAGCATACCCCCACAGATTGGGAATCTGAGAAACTTGAACTTTTTGGATCTTGGATACAATCGGATTTCCGGAGTTATTCCGGAAGAGATGTCAGGCTGCAGGAATCTCACGTTTTTGGACCTACATTCCAATATGATCGCTGGGAGCTTGCCAGAGAGTCTGAGTGAGCTGGTCTCGCTTCAATTCATCGACTTCTCTGATAACATGGTCGAAGGTACACTGAGCCCGAGACTAGGATCACTTGGTTCACTCACAAAACTGGTTCTCGGAAAGAATCATATCTCGGGATCAATTCCGACTCAGCTCGGTTCCTGTTCGAAGCTTCAGTTGCTGGACCTTAGTAGCAACAATTTCTCCGGTGATATCCCCGGCAGTCTTGGTGATATTCCGGGGCTTGAAATTGCACTGAATCTGAGCTTGAATAAACTATCAGGCGAGATTCCTCAGGAGTTTTCAGCCTTGGTTAAGCTGGGGATCTTAGACATCTCCCACAACGAGCTCACCGGTAACCTCCACTATCTCGCGGACCTCCAAAATCTCGTCGTCCTCAATATCTCGTATAACAAATTCTCCGGGCGCATCCCGGACACGCCTTTCTTCGCAAAGCTTCCTCTAAGTATGCTCGCCGGCAACCCATCGCTCTGCCTCTCCGTAAACCGATGCGCGGAAGACGACTCCGGGAGCCGTTCGGGTAGGCGTGCGAAGACGGCGCGTATAGCCATGGTGGCCCTACTTTGCACCGCGTGTGTTCTGCTCTTGGCGGCGCTGTACGTCGTCGTCGCGGCAAAACAACGACAGAGGGGCCACGGTAACGATCTCGACCCCGACGGGAGGGATAGTGACATGGAGATGGGCCCACCATGGGAGGTGACAGTGTACCAGAAGCTCGACCTGTCAATTTCTGACGTGGCCAAGTGTCTCACCGCTGGAAACGTCATCGGACGCGGCCGATCCGGGGTGGTTTACAGAGTGAACATGCCAGAGGGAATAGACATGGCCGTGAAGAGGATCCGGTCATCGGAGAAATTCTCAGCAGTGGCATTCTCGTCGGAGATAACAACATTAGCGAGAATACGACACCGTAATATCGTGAGGTTACTGGGCTGGGCGGCGAACCAGAAGACGAAGTTACTGTTTTATGATTACTTACCAAACGGTAATCTGGATACGCTATTACACGAGGGGTGCACAGGATTGATCGAGTGGGAGACACGGTTCAAGATAGCACTGGGCGTGGCGGAAGGCTTAGCTTATTTACACCATGACTGTGTGCCTGCTATCTTGCACCGGGACGTAAAAGCGCACAACATCTTGTTAGGAGACAGGTACGAGCCGTGTCTGGCAGATTTTGGTTTCGCCAGATTGGTACAGGACGACCCAGCTTCCTTCTCGGTGAATCCACAGTTCGCTGGTTCTTACGGCTACATTGCGCCGGAGTATGGGTGCATGCTGAAGATAACAGAGAAGAGCGACGTGTATAGCTATGGAGTGGTACTACTAGAGATAATAACAGGGAAACGACCGGTGGACGCGTCGTTTGGTGAGGGGCTACATGTGATAGATTGGGTGAGAGATCATCTGAAGAGGAAGAAGGACCCTGTGGAGATTGTGGATCCAAAGCTTCAAGGCCACACAGACACACACATCCAAGAGATGCTTCAGGCACTGGGCATCTCCCTTCTCTGTACCAGCACTCGCCCCGACAACCGCCCCACCATGAAAGACGTCGCCGCTTTGCTCCGAGAAATCCGCCACGATCCTCCTCCCGCCGGCCACGACGCCCACAAGCCCAAGCTTTCCACCAACTCTTCTTCCTCCTCCTCCGTCACTCCCGCCCAGTTGTTGCTTCTTGATCATCCTTCCTCTCATTCTTCATCGCTTGCTTATTCGTCTTCTACGCTGCAAGGAAGGAGCGCGTGA 3330 0.4904 MPENPWTLFFLVAALLLHSQCSFIVSAVNPQGQALLSWKTSLNRSLEVLSNWDPVDNTPCGWFGVSCNFKNEVVQLDLRYVDLLGSLPSNFTSLSSLTKLILIGTNLTGSIPKEIGFLSNLTYLDLSDNALTGEIPSELCFLPELQELHLNSNQLEGSIPIAIGNLTKLEWLILYDNQLSGEIPPTIGNLNTLQVIRAGGNKNLEGALPREIGNCSKLVMLGLAETSISGFLPPTLGLLKKLNTIAIYTSLLSGQIPPELGDCTELENIYLYENSLTGSLPSRLGNLRNLKNLLLWQNNLVGTIPWEIGNCYQFSVIDISMNSLTGSIPKSFGNLTALEELQLSENQISGEIPAELGNCEQLTHIELDNNQITGTIPSKFGNLRNLTLLFLWHNKLEGSIPSSLSNCQNLEAVDLSQNSLTGPIPKGIFELKNLNKLLLLSNNLSGNIPSEIGNCSSLIRFRVSKNKITGSIPPQIGNLRNLNFLDLGYNRISGVIPEEMSGCRNLTFLDLHSNMIAGSLPESLSELVSLQFIDFSDNMVEGTLSPRLGSLGSLTKLVLGKNHISGSIPTQLGSCSKLQLLDLSSNNFSGDIPGSLGDIPGLEIALNLSLNKLSGEIPQEFSALVKLGILDISHNELTGNLHYLADLQNLVVLNISYNKFSGRIPDTPFFAKLPLSMLAGNPSLCLSVNRCAEDDSGSRSGRRAKTARIAMVALLCTACVLLLAALYVVVAAKQRQRGHGNDLDPDGRDSDMEMGPPWEVTVYQKLDLSISDVAKCLTAGNVIGRGRSGVVYRVNMPEGIDMAVKRIRSSEKFSAVAFSSEITTLARIRHRNIVRLLGWAANQKTKLLFYDYLPNGNLDTLLHEGCTGLIEWETRFKIALGVAEGLAYLHHDCVPAILHRDVKAHNILLGDRYEPCLADFGFARLVQDDPASFSVNPQFAGSYGYIAPEYGCMLKITEKSDVYSYGVVLLEIITGKRPVDASFGEGLHVIDWVRDHLKRKKDPVEIVDPKLQGHTDTHIQEMLQALGISLLCTSTRPDNRPTMKDVAALLREIRHDPPPAGHDAHKPKLSTNSSSSSSVTPAQLLLLDHPSSHSSSLAYSSSTLQGRSA 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1229g00003 1109 ProSitePatterns Protein kinases ATP-binding region signature. 783 805 IPR017441 GO:0005524
Pral1229g00003 1109 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Pral1229g00003 1109 Gene3D Ribonuclease Inhibitor 30 135 IPR032675 -
Pral1229g00003 1109 Gene3D Ribonuclease Inhibitor 136 198 IPR032675 -
Pral1229g00003 1109 MobiDBLite consensus disorder prediction 1067 1109 - -
Pral1229g00003 1109 MobiDBLite consensus disorder prediction 1055 1109 - -
Pral1229g00003 1109 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 853 1068 - -
Pral1229g00003 1109 Pfam Leucine rich repeat 460 516 IPR001611 GO:0005515
Pral1229g00003 1109 Pfam Leucine rich repeat 316 372 IPR001611 GO:0005515
Pral1229g00003 1109 SUPERFAMILY Protein kinase-like (PK-like) 764 1052 IPR011009 -
Pral1229g00003 1109 Gene3D Ribonuclease Inhibitor 605 692 IPR032675 -
Pral1229g00003 1109 ProSitePatterns Serine/Threonine protein kinases active-site signature. 897 909 IPR008271 GO:0004672|GO:0006468
Pral1229g00003 1109 SUPERFAMILY RNI-like 268 643 - -
Pral1229g00003 1109 Gene3D Ribonuclease Inhibitor 426 519 IPR032675 -
Pral1229g00003 1109 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 28 201 - -
Pral1229g00003 1109 SMART serkin_6 777 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1229g00003 1109 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 410 1049 - -
Pral1229g00003 1109 SUPERFAMILY L domain-like 45 374 - -
Pral1229g00003 1109 Gene3D Ribonuclease Inhibitor 199 425 IPR032675 -
Pral1229g00003 1109 Gene3D Phosphorylase Kinase; domain 1 760 852 - -
Pral1229g00003 1109 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 202 425 - -
Pral1229g00003 1109 SMART LRR_typ_2 479 503 IPR003591 -
Pral1229g00003 1109 SMART LRR_typ_2 142 165 IPR003591 -
Pral1229g00003 1109 SMART LRR_typ_2 504 527 IPR003591 -
Pral1229g00003 1109 SMART LRR_typ_2 287 311 IPR003591 -
Pral1229g00003 1109 SMART LRR_typ_2 647 671 IPR003591 -
Pral1229g00003 1109 SMART LRR_typ_2 118 140 IPR003591 -
Pral1229g00003 1109 SMART LRR_typ_2 166 190 IPR003591 -
Pral1229g00003 1109 SMART LRR_typ_2 383 407 IPR003591 -
Pral1229g00003 1109 SMART LRR_typ_2 335 359 IPR003591 -
Pral1229g00003 1109 SMART LRR_typ_2 551 575 IPR003591 -
Pral1229g00003 1109 Pfam Leucine Rich repeats (2 copies) 120 155 IPR025875 -
Pral1229g00003 1109 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 428 695 - -
Pral1229g00003 1109 ProSiteProfiles Protein kinase domain profile. 777 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral1229g00003 1109 ProSiteProfiles Leucine-rich repeat profile. 120 143 IPR001611 GO:0005515
Pral1229g00003 1109 Gene3D Ribonuclease Inhibitor 520 604 IPR032675 -
Pral1229g00003 1109 Gene3D Transferase(Phosphotransferase) domain 1 853 1066 - -
Pral1229g00003 1109 Pfam Protein kinase domain 780 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1229g00003 Pral-Chr1229 26470 31818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1229g00003 1 1055 Receptor kinase-like Gene Family AT5G56040 54.793 0.0 1110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pral1229g00003 Pkinase 2.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1229g00003 - - gmx:100778064 1664.05