Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1228g00012 ATGTCACGCGTCTGCTTTCATTGCTTTGAAATAATGGACCTGATGACCAGAAGAGAGTTGAAGGGGATAAACACTTCAAAACCCAGACCTTCAATTTCTGCAGTTAAGCTTAATACAGAAGATCATGGCCACGTGGTGATTGAGAATGGCATTGTTCAAATCACTCTGTCCAGCCCCGAGGGGTATATTCTTGGCATATCATATGATGGAATCGACAATGTACTAGAATCTCGAAACGAAGAACAAGACAGAGGGTATTTTGATGTGGTCTGGAATAAGCCTGGGAACAGCAGCACTTTTCAGAGAATCCATGGGACCGAATTTTCAGTTGTATCATTGGACGAAAACCAAGTGGAGATTTCCTTTGTAAGAACATGGACGCCCTCCCTGGAAGGCTCGAATGTCCCCATAAACATAGACCAAAGGTATGTATTGCGAAGAGGCGATTCTGGGTTTTACTCTTACACAATATTTGAACGCCCAGAAGGATTTCCTGCAGTGGAGGTTGATCAAATCAGGAATGTTTTCAAGCTCCAGGAAGAAAGGTTCGTCTACATGGCTATATCAGACACTAGGCAAAGATACATGCCAACCATGAAAGACAGAGAAACAGGACAACCTCTGGCTTATCCTGAAGCAGTTCTCTTAACCAATCCATCTAATGAAAACTTTAGAGGAGAGGTGGACGACAAATATCAATACTCTTGTGAGAATAAAGACAACAAAGTGCATGGTTGGATTAGCGTTGATGCTGAAGCACCCGTGGGCTTTTGGGTAATAACACCCAGTAACGAGTTTCGCAATGCTGGGCCCATCAAGCAAGACCTTACCTCTCACGTGGGCCCATTTGCCCTCTCTATGTTTGTGAGCACTCACTATGCTGGGAAGGAGGTAACTATGGAATTTCAAGAAGGAGAGACTTACAGGAAGGTTTTCGGCCCCATTTTTGTGTATCTGAACTCTGTTTCAAGCTCTGAGAATCCACTAACACTCTGGACAGATGCCACACAACAAATGTCTAAGGAAGTCAAAAGTTGGCCTTATGATTTCCCAAGATCACAAGCTTACATTCCACCTACCCAACGTGGAAGCGTGGCTGGAAGATTACTGGTTCAAGATTGGTATATCAGAGGAGGCAGATTTCTATATGCTGACTCTGCATATGTTGGTCTGGCTCTTCCTGGTGCTGCAGGATCATGGCAAAGAGAAAGCAAGGGTTATCAATTTTGGACCCAAGCGAACAAGAAGGGCTATTTTGTGATAAACAATGTTGTTCCCGGTGAGTATAACTTGTTTGCATGGGTTCCTGGCTTTATTGGTGATTACAGATACAATGCTACAATAACCATTAGCCCAGGTAGTGTAGTCCAATTGGACTCACTTGTATATAATCCGCCAAGAAGTGGATCCACTGTTTGGGAAATTGGAATCCCAGATCGCTCAGCTGCAGAATTCTATATCCCGGACCCTTACCCTACACTCATGAACAAATTGTACAATGAACAACCCAAAGACAAGTATAGACAATATGGTTTATGGGAACACTATGCTGATTTATATCCAAACAATGATCTAGTCTACACCGTTGGTGTTAGTTCATATGATCAAGACTGGTTCTATGCTCATGTTACAAGGAGCACTGGCAATACGACTTACCAGGCAACGACATGGCAGATTAGGTTTAATCTTCCATATGGCCCATTCAAAGGAAATTACACCCTCCAACTAGCCTCAGCCGCAGCCGCTAATTCTGACCTAAAGATTTGGATCAACGGGCAAGGTAACGCTCCTGCACTGTTTGAAACCGGAAAATTTGGAGGGGACAGTGCCATAGCAAGGCACGGTATCCATGGACTGTACTGGTTGTTCAGCATTGATGTTCCCAGCGATGTTTTAATGAAAGGGAATAATACCATCTATTTGCAACAGTCATTTGCCATAAGTCCTTTTCAAGGAGTTATGTATGACTATATACGTTTAGAAAGACCACCAACTCTAAGGACCTGA 2007 0.434 MSRVCFHCFEIMDLMTRRELKGINTSKPRPSISAVKLNTEDHGHVVIENGIVQITLSSPEGYILGISYDGIDNVLESRNEEQDRGYFDVVWNKPGNSSTFQRIHGTEFSVVSLDENQVEISFVRTWTPSLEGSNVPINIDQRYVLRRGDSGFYSYTIFERPEGFPAVEVDQIRNVFKLQEERFVYMAISDTRQRYMPTMKDRETGQPLAYPEAVLLTNPSNENFRGEVDDKYQYSCENKDNKVHGWISVDAEAPVGFWVITPSNEFRNAGPIKQDLTSHVGPFALSMFVSTHYAGKEVTMEFQEGETYRKVFGPIFVYLNSVSSSENPLTLWTDATQQMSKEVKSWPYDFPRSQAYIPPTQRGSVAGRLLVQDWYIRGGRFLYADSAYVGLALPGAAGSWQRESKGYQFWTQANKKGYFVINNVVPGEYNLFAWVPGFIGDYRYNATITISPGSVVQLDSLVYNPPRSGSTVWEIGIPDRSAAEFYIPDPYPTLMNKLYNEQPKDKYRQYGLWEHYADLYPNNDLVYTVGVSSYDQDWFYAHVTRSTGNTTYQATTWQIRFNLPYGPFKGNYTLQLASAAAANSDLKIWINGQGNAPALFETGKFGGDSAIARHGIHGLYWLFSIDVPSDVLMKGNNTIYLQQSFAISPFQGVMYDYIRLERPPTLRT 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1228g00012 668 Gene3D - 468 661 - -
Pral1228g00012 668 Pfam Polysaccharide lyase family 4, domain II 385 457 IPR029413 -
Pral1228g00012 668 CDD RGL4_M 361 461 IPR029413 -
Pral1228g00012 668 CDD RGL4_N 38 324 - -
Pral1228g00012 668 Gene3D - 357 460 - -
Pral1228g00012 668 Pfam Rhamnogalacturonate lyase family 34 228 IPR010325 -
Pral1228g00012 668 SUPERFAMILY Galactose mutarotase-like 39 323 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pral1228g00012 668 FunFam Rhamnogalacturonate lyase B 358 458 - -
Pral1228g00012 668 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 36 664 - -
Pral1228g00012 668 CDD RGL4_C 473 661 - -
Pral1228g00012 668 Gene3D - 37 340 IPR014718 GO:0030246
Pral1228g00012 668 SUPERFAMILY Starch-binding domain-like 357 460 IPR013784 GO:0030246
Pral1228g00012 668 SUPERFAMILY Galactose-binding domain-like 468 661 IPR008979 -
Pral1228g00012 668 Pfam Polysaccharide lyase family 4, domain III 471 660 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1228g00012 Pral-Chr1228 54269 58082 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1228g00012 32 663 Polysaccharide Lyase AT1G09890 55.660 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1228g00012 K18195 - gmx:100776664 986.867