Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1228g00010 ATGAAGAGGAGGGTAGGTGAGATCGTAAGGAAACAAGTTTTCTTGCTGTGGTGGTTTGGAATGACTGTGCAGTTCTGCTTCTTGTTGGGTGCTTCTCTCTCTTATGACACCACCTCATTCAGCAGAAGAGAGTTGAAGGGGATAAACACTTCAAAACCCAGACCTTCAATTTCTGCAGTTAAGCTTAATACAGAAGATCATGGCCACGTGGTGATTGAGAATGGCATTGTTCAAATCACTCTGTCCAGCCCCGAGGGGTATATTCTTGGCATATCATATGATGGAATCGACAATGTACTAGAATCTCGAAACGAAGAACAAGACAGAGGGTATTTTGATGTGGTCTGGAATAAGCCTGGGAACAGCAGCACTTTTCAGAGAATCCATGGGACCGAATTTTCAGTTGTATCATTGGACGAAAACCAAGTGGAGATTTCCTTTGTAAGAACATGGACGCCCTCCCTGGAAGGCTCGAATGTCCCCATAAACATAGACCAAAGGTATGTATTGCGAAGAGGCGATTCTGGGTTTTACTCTTACACAATATTTGAACGCCCAGAAGGATTTCCTGCAGTGGAGGTTGATCAAATCAGGAATGTTTTCAAGCTCCAGGAAGAAAGGTTCGTCTACATGGCTATATCAGACACTAGGCAAAGATACATGCCAACCATGAAAGACAGAGAAACAGGACAACCTCTGGCTTATCCTGAAGCAGTTCTCTTAACCAATCCATCTAATGAAAACTTTAGAGGAGAGGTGGACGACAAATATCAATACTCTTGTGAGAATAAAGACAACAAAGTGCATGGTTGGATTAGCGTTGATGCTGAAGCACCCGTGGGCTTTTGGGTAATAACACCCAGTAACGAGTTTCGCAATGCTGGGCCCATCAAGCAAGACCTTACCTCTCACGTGGGCCCATTTGCCCTCTCTATGTTTGTGAGCACTCACTATGCTGGGAAGGAGGTAACTATGGAATTTCAAGAAGGAGAGACTTACAGGAAGGTTTTCGGCCCCATTTTTGTGTATCTGAACTCTGTTTCAAGCTCTGAGAATCCACTAACACTCTGGACAGATGCCACACAACAAATGTCTAAGGAAGTCAAAAGTTGGCCTTATGATTTCCCAAGATCACAAGCTTACATTCCACCTACCCAACGTGGAAGCGTGGCTGGAAGATTACTGGTTCAAGATTGGTATATCAGAGGAGGCAGATTTCTATATGCTGACTCTGCATATGTTGGTCTGGCTCTTCCTGGTGCTGCAGGATCATGGCAAAGAGAAAGCAAGGGTTATCAATTTTGGACCCAAGCGAACAAGAAGGGCTATTTTGTGATAAACAATGTTGTTCCCGGTGAGTATAACTTGTTTGCATGGGTTCCTGGCTTTATTGGTGATTACAGATACAATGCTACAATAACCATTAGCCCAGGTAGTGTAGTCCAATTGGACTCACTTGTATATAATCCGCCAAGAAGTGGATCCACTGTTTGGGAAATTGGAATCCCAGATCGCTCAGCTGCAGAATTCTATATCCCGGACCCTTACCCTACACTCATGAACAAATTGTACAATGAACAACCCAAAGACAAGTATAGACAATATGGTTTATGGGAACACTATGCTGATTTATATCCAAACAATGATCTAGTCTACACCGTTGGTGTTAGTTCATATGATCAAGACTGGTTCTATGCTCATGTTACAAGGAGCACTGGCAATACGACTTACCAGGCAACGACATGGCAGATTAGGTTTAATCTTCCATATGGCCCATTCAAAGGAAATTACACCCTCCAACTAGCCTCAGCCGCAGCCGCTAATTCTGACCTAAAGATTTGGATCAACGGGCAAGGTAACGCTCCTGCACTGTTTGAAACCGGAAAATTTGGAGGGGACAGTGCCATAGCAAGGCACGGTATCCATGGACTGTACTGGTTGTTCAGCATTGATGTTCCCAGCGATGTTTTAATGAAAGGGAATAATACCATCTATTTGCAACAGTCATTTGCCATAAGTCCTTTTCAAGGAGTTATGTATGACTATATACGTTTAGAAAGACCACCAACTCTAAGGACCTGA 2082 0.4356 MKRRVGEIVRKQVFLLWWFGMTVQFCFLLGASLSYDTTSFSRRELKGINTSKPRPSISAVKLNTEDHGHVVIENGIVQITLSSPEGYILGISYDGIDNVLESRNEEQDRGYFDVVWNKPGNSSTFQRIHGTEFSVVSLDENQVEISFVRTWTPSLEGSNVPINIDQRYVLRRGDSGFYSYTIFERPEGFPAVEVDQIRNVFKLQEERFVYMAISDTRQRYMPTMKDRETGQPLAYPEAVLLTNPSNENFRGEVDDKYQYSCENKDNKVHGWISVDAEAPVGFWVITPSNEFRNAGPIKQDLTSHVGPFALSMFVSTHYAGKEVTMEFQEGETYRKVFGPIFVYLNSVSSSENPLTLWTDATQQMSKEVKSWPYDFPRSQAYIPPTQRGSVAGRLLVQDWYIRGGRFLYADSAYVGLALPGAAGSWQRESKGYQFWTQANKKGYFVINNVVPGEYNLFAWVPGFIGDYRYNATITISPGSVVQLDSLVYNPPRSGSTVWEIGIPDRSAAEFYIPDPYPTLMNKLYNEQPKDKYRQYGLWEHYADLYPNNDLVYTVGVSSYDQDWFYAHVTRSTGNTTYQATTWQIRFNLPYGPFKGNYTLQLASAAAANSDLKIWINGQGNAPALFETGKFGGDSAIARHGIHGLYWLFSIDVPSDVLMKGNNTIYLQQSFAISPFQGVMYDYIRLERPPTLRT 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1228g00010 693 CDD RGL4_C 498 686 - -
Pral1228g00010 693 CDD RGL4_N 63 349 - -
Pral1228g00010 693 SUPERFAMILY Galactose mutarotase-like 64 348 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pral1228g00010 693 Gene3D - 382 485 - -
Pral1228g00010 693 CDD RGL4_M 386 486 IPR029413 -
Pral1228g00010 693 FunFam Rhamnogalacturonate lyase B 383 483 - -
Pral1228g00010 693 Pfam Polysaccharide lyase family 4, domain III 496 685 IPR029411 -
Pral1228g00010 693 Gene3D - 493 686 - -
Pral1228g00010 693 Pfam Rhamnogalacturonate lyase family 59 253 IPR010325 -
Pral1228g00010 693 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 61 689 - -
Pral1228g00010 693 Gene3D - 62 365 IPR014718 GO:0030246
Pral1228g00010 693 SUPERFAMILY Starch-binding domain-like 382 485 IPR013784 GO:0030246
Pral1228g00010 693 Pfam Polysaccharide lyase family 4, domain II 410 482 IPR029413 -
Pral1228g00010 693 SUPERFAMILY Galactose-binding domain-like 493 686 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1228g00010 Pral-Chr1228 54269 59361 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1228g00010 57 688 Polysaccharide Lyase AT1G09890 55.660 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1228g00010 K18195 - gmx:100776664 1023.08