Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1228g00009 ATGTTAACATTACTAAAAAGGAAGCCGGAGTTGCCCTGGGGTTATATTAATGTATTTATAAAGATCCAAGGAAAATTAGAACCTCGTGATCAGACAAAACCTTGGTCCCTCATCTCCTACGGTTTTCAGCACATCCCAGAACAAGGGCCTGCATTGCGTTCTTCTTCTGAAATGAAGTTGCTAGTTTTGGATTTGCAGCTTTTCTTTCTGCACTGTGGTTGTTCTGACAGCAGGATCTTGGAAAGAAAAATGTTGTGGAGAAATATAAACAGTATTCCAAAACCCAGTTCTGCAGTTAAGCTGAACACAGAACATCATGGGAAAGTGATGATGGACAATGGCATAGTCCATGTCACCCTGTCAAGACCAGAGGGGAATGTTGTGGGAATATCATATGAGGGAATCGAAAATGTACTAGAATCTCGCAATGATGAACAAGACAGAGGGTATTTCGATGTAGTTTGGAATAAACAAGGAAAAGACAATAATTATCATCAGAGAATCGAGGGGACAAAGTTTACAATCGTAGCAGAAGAAAAAAATCAAGTGGAGGTTTCGTTCACCACAACATGGACATCTTCCATGGAAGGCAAAAGCGTCCCCATCAACATAGACCGAAGGTATATATTGCGACGAGGAAGTTCTGGATTTTACTCTTACGTTATATTCGATCGTCCAGAAGGATTTCCAGCAGTCCAGGTTGAGCAAATCAGGACTGTTTACAAGCTTCAGGAAGACAGGTTCCATTATATGGCTATCTCAGACACTAGGCAAAGATACATGCCAACAATGGAAGATAGAAAAAGAGGGAAAACTTTAGCTTATCCTGAAGCTGTTCTCTTAACCAACCCATCCAACGAAATCTTTAAAGGAGAGGTGGACGACAAATACCAGTACGCTTGTGAGAATAAGGACAGCAGAGTACATGGTTGGATTAGCATCAATTCTAATGCAGCCATGGGGTTCTGGTTAATAACACCCAGCAACGAGTTTCGCAATGGCGGGCCCATCAAGCAGGATCTTACTTCTCATGTGGGCCCCTTTACTCTCTCCATGTTTATGAGCATGCACTTGGCTGGGAAGGAGGCAGCCATGGAATTTCAAGAAGGGGAGACCTATAAGAAGGTTTTTGGCCCTGTTTTTGTGTATCTTAACTCCATTTCGAGCAATGCCAATGCACAAACGCTCTGGCGAGATGCTGTACAACAAATGTCGAAGGAAGTCCAAAGCTGGCCTTACGATTTCCCAAAGTCACAAGATTACATTCCACCCACCAAACGTGGAAGTGTGACTGGAAGATTACTGGTTCAAGATCGGTATATCGAAGGAGGCAGGTTCCAAAATGCTAACTCGGCTTATGTTGGTTTAGCTTTGCCTGGTGATGCAGGATCATGGCAAACAGAAAGCAAGGGTTATCAGTTCTGGACTCAAGCTGACAAAGAGGGCTATTTCGCGATAAAGAATGTTATCCCAGGAAAGTATAATTTGTTTGCTTGGGTTCCAGGCTTTATTGGTGATTATAAATATAATACAACAATCACCATCACGCCAGCGTGTCGGATCAAATTAGGTTTTCTTGTATATAGTCCTCCAAGAAATGGTCTTACCGTTTGGGAAATTGGAGTGCCAGATCGGTCAGCAGCAGAATTCTATATCCCGGACGCAAATCATGAACTCCTGAACAAATTATACAACAATCGTCCCGAAGAAAAGTTTAGACAATATGGATTGTGGGAACGCTATGCTGAATTGTATCCAAAAAATGATCTGGTTTACACTGTTGGTGTTGACTCTCATGATAAGGATTGGTTCTTTGCTCATGTTACAAGGAACATAGGAGATAGCAGATATCAGCCAACTACATGGAAGATTAAATTTGAACTTCGAAGACGGAATCTGTTAGTAGGAAATTACACCCTACGACTGGCTTTAGCATCAGCCACTAGTTCTAAATTGCAGGTTTGGATCAATGAGCAAGGTGAGAAGCGTCCCCTATTTCAAACTGGATTGTTAAGAGGAGACAATGCCATAGCAAGGCATGGAATCCATGGACTGTATTGGTTGTTCAGCATCGATGTTCCAAGCGATCGTTTAGTAGAAGGCAACAATACTATCTATTTGAAACAGCCACTTGCCATTAGTCCTTTCCAAGGACTTATGTATGACTATATCCGTCTAGAGAGACCTTCCAATCTAAGAATTTGA 2205 0.42 MLTLLKRKPELPWGYINVFIKIQGKLEPRDQTKPWSLISYGFQHIPEQGPALRSSSEMKLLVLDLQLFFLHCGCSDSRILERKMLWRNINSIPKPSSAVKLNTEHHGKVMMDNGIVHVTLSRPEGNVVGISYEGIENVLESRNDEQDRGYFDVVWNKQGKDNNYHQRIEGTKFTIVAEEKNQVEVSFTTTWTSSMEGKSVPINIDRRYILRRGSSGFYSYVIFDRPEGFPAVQVEQIRTVYKLQEDRFHYMAISDTRQRYMPTMEDRKRGKTLAYPEAVLLTNPSNEIFKGEVDDKYQYACENKDSRVHGWISINSNAAMGFWLITPSNEFRNGGPIKQDLTSHVGPFTLSMFMSMHLAGKEAAMEFQEGETYKKVFGPVFVYLNSISSNANAQTLWRDAVQQMSKEVQSWPYDFPKSQDYIPPTKRGSVTGRLLVQDRYIEGGRFQNANSAYVGLALPGDAGSWQTESKGYQFWTQADKEGYFAIKNVIPGKYNLFAWVPGFIGDYKYNTTITITPACRIKLGFLVYSPPRNGLTVWEIGVPDRSAAEFYIPDANHELLNKLYNNRPEEKFRQYGLWERYAELYPKNDLVYTVGVDSHDKDWFFAHVTRNIGDSRYQPTTWKIKFELRRRNLLVGNYTLRLALASATSSKLQVWINEQGEKRPLFQTGLLRGDNAIARHGIHGLYWLFSIDVPSDRLVEGNNTIYLKQPLAISPFQGLMYDYIRLERPSNLRI 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1228g00009 734 SUPERFAMILY Galactose-binding domain-like 534 727 IPR008979 -
Pral1228g00009 734 Gene3D - 534 727 - -
Pral1228g00009 734 Pfam Polysaccharide lyase family 4, domain II 450 522 IPR029413 -
Pral1228g00009 734 Gene3D - 422 518 - -
Pral1228g00009 734 Pfam Rhamnogalacturonate lyase family 96 293 IPR010325 -
Pral1228g00009 734 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 101 730 - -
Pral1228g00009 734 CDD RGL4_M 426 524 IPR029413 -
Pral1228g00009 734 CDD RGL4_N 102 386 - -
Pral1228g00009 734 Gene3D - 101 403 IPR014718 GO:0030246
Pral1228g00009 734 SUPERFAMILY Galactose mutarotase-like 105 387 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pral1228g00009 734 FunFam Rhamnogalacturonate lyase B 423 523 - -
Pral1228g00009 734 SUPERFAMILY Starch-binding domain-like 422 525 IPR013784 GO:0030246
Pral1228g00009 734 Pfam Polysaccharide lyase family 4, domain III 536 726 IPR029411 -
Pral1228g00009 734 CDD RGL4_C 538 727 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1228g00009 Pral-Chr1228 48431 52452 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1228g00009 97 730 Polysaccharide Lyase AT1G09890 56.270 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1228g00009 K18195 - gmx:100776664 893.264