Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1228g00008 ATGAGTGTGCTGCAAGTGTTCTTCTTCTTCTTCTTGCTCGCTGGTTGTTCTGAGATCACCAAATCTAGTGTTGTGCGTAAGATGGAAGACTCTCATCAACCTGTCACGCTACAGCAAAGTGATGACAAGGTGGTGATGTATAATGGGATCGTTAGCGCTACGGTGTCGCGGCCAGACGGCAATTTGATAGGATTATCATATAATGGCATTGATAACCTTCTTGAACCTCTTACTCGTGCTGATAATAGAGGTTATTGGGACTTTTCTTGGAACCCACTTAGTGGCCGCAGTAACTATTACAGATTCAAAGGGACAAAGTTTTCTGTTATAATGGAGAACGAAGATCAAGTTGAAGTTTCTTTATTATACACATGGAATTCTTCCTTGCCTTCAGGAAAGATCCCAATGAATATAGATATAAGGTATATTTTACGGAGAGGCAGCTCAGGGTTATATTCATATGCCATATTTGAGCGTTCAGAAGATTTTCCTGCAATTCGGGTGGATGTCTTTAGGCTCGCTTACAAGCTCAGCCAAGGCCTGTTCCACTACATGGCTATAACAGACGAAAGGCAGAGAGAAATGCCCACTGCTCAAGATAGATCCAAAGGCCAGACCCTTGATTATCCTGAAGCTGTCCTCTTAACCCATCCTAGCAACCCTGAATTCTTCGGAGAGGTGGATGATAAGTACATGTACTCGGTTGAGAACAAAGACAACAAAGTTAGCGGATGGGTCGCTTTTAACAGTACCAATTCTTCATCAATGGGGTTCTGGATGATTACACCTAGCAACGAATTCCGAAATGGTGGACCTACCAAGCAAAGTCTCACCTGTCATGTTGGTCCTGTCACCCTCAACTCTTTCGTGAGCCCGCACTATGCTGGGTCGAAGGACATATCCATGATATTCAAAGAAGGAGAGACCTACAAGAAGGTATTCGGCCCCACTTTTCTGTACCTCAACACTGTTGCCAACCCCCGTGATTCTCAAACTCTCTGGGACGATGCTAAAAACCAGATGCAAAAGGAAGTTGGAAGCTGGCCGTATGATTTTCCTCAATCAAAAGATTTCATTCCATCCAATCAACGGGGAAAAGTGTCTGGACAATTGCTAATCAGATGGTACCCTACAGGTGTTACATTATTTAACGTTAGTAATGCTTACGTTGGTCTAGCCCTCCCAGGAGATGAAGGATCATGGCAAACAGAAAGCAAGGGTTATCAATTTTGGACCCAAACTGATAGTAGCGGCTTCTTCACTATACAAAATGTTGTGCCCGGGGACTACAACTTGTATGGTTGGGTCCCTGGCATTCTTGGTGATTACAAATATGAGTATGACATTACCATCAAATCAGGAGATGACATCCAATTAGGTCAATTATACTATTGGCCTCCAAGAACTGGTCCTACGGTTTGGGAAATTGGAATTCCTGATCGATCAGCTCAAGAGTTTTATGTGCCCGACCCATATCCTAGTCTCGTTAACAACTTATACCTAGGAAAGCCCAATGACAGGTTTAGACAGTACGGCTTGTGGAAACGTTATACTGAATTATATCCAACTAACGACCTCGTTTACCATGTGGGTGTTAGTGATTATTCCAAAGATTGGTTCTACGCTCAGGTTCCCAGGGACCTAGGAAACAGCACATACAGTGCAACAACATGGGAGATAAGATTTGAACTCCCATTTGTCATTAGAGGAAGTTACACACTACATATTGCCTTAGCATCAACCACTAGTTCTCGCTTAATCGTTTGGGTCAATAAAGGCGGGAATCGTCACCTGAGGTTCAATACAGGATTAAGAGGAGAGGACAATGCGATAGCAAGGCATGGCATCCATGGATTGTATTGGAGATACAACTTTCAAGTACCAAGCTCTCTACTTGTCACAGGAACCAACTCCATTTACCTCACACAACCTAAGGCTAAATCTCCTCTTCAAGGAATTATGTATGACTATATCCGTTTTGAAAGCCCCACGCTTTTTGGCTCTCCTAATCATAATTAA 2019 0.4314 MSVLQVFFFFFLLAGCSEITKSSVVRKMEDSHQPVTLQQSDDKVVMYNGIVSATVSRPDGNLIGLSYNGIDNLLEPLTRADNRGYWDFSWNPLSGRSNYYRFKGTKFSVIMENEDQVEVSLLYTWNSSLPSGKIPMNIDIRYILRRGSSGLYSYAIFERSEDFPAIRVDVFRLAYKLSQGLFHYMAITDERQREMPTAQDRSKGQTLDYPEAVLLTHPSNPEFFGEVDDKYMYSVENKDNKVSGWVAFNSTNSSSMGFWMITPSNEFRNGGPTKQSLTCHVGPVTLNSFVSPHYAGSKDISMIFKEGETYKKVFGPTFLYLNTVANPRDSQTLWDDAKNQMQKEVGSWPYDFPQSKDFIPSNQRGKVSGQLLIRWYPTGVTLFNVSNAYVGLALPGDEGSWQTESKGYQFWTQTDSSGFFTIQNVVPGDYNLYGWVPGILGDYKYEYDITIKSGDDIQLGQLYYWPPRTGPTVWEIGIPDRSAQEFYVPDPYPSLVNNLYLGKPNDRFRQYGLWKRYTELYPTNDLVYHVGVSDYSKDWFYAQVPRDLGNSTYSATTWEIRFELPFVIRGSYTLHIALASTTSSRLIVWVNKGGNRHLRFNTGLRGEDNAIARHGIHGLYWRYNFQVPSSLLVTGTNSIYLTQPKAKSPLQGIMYDYIRFESPTLFGSPNHN 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1228g00008 672 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 38 664 - -
Pral1228g00008 672 SUPERFAMILY Galactose-binding domain-like 470 661 IPR008979 -
Pral1228g00008 672 CDD RGL4_N 40 327 - -
Pral1228g00008 672 SUPERFAMILY Galactose mutarotase-like 38 328 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pral1228g00008 672 Pfam Polysaccharide lyase family 4, domain II 387 458 IPR029413 -
Pral1228g00008 672 SUPERFAMILY Starch-binding domain-like 360 460 IPR013784 GO:0030246
Pral1228g00008 672 Pfam Rhamnogalacturonate lyase family 31 227 IPR010325 -
Pral1228g00008 672 Gene3D - 359 459 - -
Pral1228g00008 672 CDD RGL4_C 474 661 - -
Pral1228g00008 672 CDD RGL4_M 363 462 IPR029413 -
Pral1228g00008 672 Gene3D - 35 337 IPR014718 GO:0030246
Pral1228g00008 672 Pfam Polysaccharide lyase family 4, domain III 472 659 IPR029411 -
Pral1228g00008 672 Gene3D - 469 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1228g00008 Pral-Chr1228 36158 46905 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1228g00008 31 664 Polysaccharide Lyase AT1G09890 53.448 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1228g00008 K18195 - gmx:100792575 810.831