Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1223g00008 ATGGATCAGGAGTCATGGGAGGCTGGTTTTCACCAACATCTGGATATGGGTGGTGTTCAAGATTTCCACGACCAAGATTATTGTCACACGATGATGAATTTTGACGAGGAAGATAAAGAGCTCCTCAGGAACTTTACGCATCAAACAGGTCTACATTCGTCAGATTTAGATCCTCTGTGGTCGGAAACTGTATTATCTGCTCAAAGAGAAACAGAAACTAACGGCATCACTTCCGGCGACCAAGTGATGATGCCTCCTAGGGCATGCGTCCTGTCATTTGATAACTACAACGTGATACCAATAATCTCAAAACAAGAAGACTCCAATAAGAAACGTTTTTCGTCAAAAAGAATCAGCAGAGCGAGCCATAAGGCCGAACCAAGTGCTAAGAAGAAAAGAAGGTCTTCGGAGACCGTAATGGATCATGTAACTGCAGAGCGGATAAGAAGACGCCAAATTACAGAGGGCTTCGCAGCACTGTCTGCAACTATTCCGGGCTTGAAGAAGTTAGACAAAATGACTATACTTGAGGAAGCTATCAAATACGTGAAACAACTTCAAGAACGGGTGACAAAACTAGAAAAAGTGACTCCAGTAATATCCATAAAGAAAATTGAGGTTGGCGAAAATGACGATTTCCGTGAGGCCGATGAAGTGCTTCCAAAGATTGAAGTAAGAGTTACGGATAATCAAGTGCTTCTTGGAATCCATTGTGTGAAACAAAAGGGCATTCAGTTCAAAATATTGAGCCTGCTTCAGAATTTCAATCTCTGTGTCACAAGTAGTAGCGTTTTACCATTTGGAAATTCCATTCTAGGCATTACCATTATTGCTCAGATGGGTGATGCACACAGGATACCAGTGAATGATGTGGTGAAAAACCTGCGACAAATTCTATTAAAGTCGCATGAGGTTGATCCGTAG 924 0.4199 MDQESWEAGFHQHLDMGGVQDFHDQDYCHTMMNFDEEDKELLRNFTHQTGLHSSDLDPLWSETVLSAQRETETNGITSGDQVMMPPRACVLSFDNYNVIPIISKQEDSNKKRFSSKRISRASHKAEPSAKKKRRSSETVMDHVTAERIRRRQITEGFAALSATIPGLKKLDKMTILEEAIKYVKQLQERVTKLEKVTPVISIKKIEVGENDDFREADEVLPKIEVRVTDNQVLLGIHCVKQKGIQFKILSLLQNFNLCVTSSSVLPFGNSILGITIIAQMGDAHRIPVNDVVKNLRQILLKSHEVDP 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1223g00008 307 PANTHER BHLH TRANSCRIPTION FACTOR 53 301 - -
Pral1223g00008 307 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 198 IPR036638 GO:0046983
Pral1223g00008 307 Gene3D - 128 202 IPR036638 GO:0046983
Pral1223g00008 307 Coils Coil 176 196 - -
Pral1223g00008 307 Pfam Helix-loop-helix DNA-binding domain 142 187 IPR011598 GO:0046983
Pral1223g00008 307 MobiDBLite consensus disorder prediction 110 141 - -
Pral1223g00008 307 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983
Pral1223g00008 307 SMART finulus 143 192 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1223g00008 Pral-Chr1223 63425 64849 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1223g00008 133 299 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 42.564 1.79e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral1223g00008 HLH 4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1223g00008 - - pcin:129287632 275.789