Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1223g00002 ATGGCAGCTTTAGGAGAAGCTTATAATGGAGACATTGCCTTTGCTGATGCATTAGAAGTATTTGGTGGGGGGCAGGATGATCCTGTTAGTGTATCAATTGGAGGACCTGTCATATCTAAATTTATTGGTGCACTTCGTGAACTTGCATCTTTTAAAGAGCTTCTCCGGTCACAGGTGGAGCATGTGTTGATCGACCGGTTGGCGCAGTTTATGAATGTTGATTTACGAGATGCAAAGGATTCTCGTGCTCGTTTTGACAAAGCTGTTCATTCATATGATCAGGCACGAGAAAAATTTGTGTCTTTGAAGAAGAATACACGGGAAGACATTGTTGCTGGAGTAGAAGAGGGTCTTCTGAATTCAAAGTCAGCTTTTGAGAAAAGTCGCTTTAATCTAGTAAACTCACTCATGAACATTGAAGTGAAAAAGAAGTATGAGTTCTTGGAGTCCTTTAGTGCAATAATGGATGCCCATCTTAGATACTTCAAGCTGGGTTATGACTTACTGAGCCAAATGGAACCTTATATTCACCAGGTACTAACATATGCACAACAATCTAAAGAGCTGGCTAATGTTGAACAAGATAAGCTTGCAAAACGAATTCAGGAATATAGAACACAAGCTGAGCTGGACAACACACGAGCTTCTAGTAATGCTGATACTTTATTTGGTGCTGACGGCAGCCGTGTTGTTGGGTTGAACTCATACAAGAGCTCTGAAGTAGGGATCCAGTCTGTGCCCCAAGGTGAGTGTCAAACAGTTAAGCAAGGCTATCTGCTAAAACGATCCTCAAGATTGCGTGGAGATTGGAAGCGGAGGTTTTTTGTGCTTGACAACCAAGGGAGTTTATATTACTATAGAGCGAAGGGAGCCAAGGCTATGGGCTCTCAATCATATAATTATACTAGATCAACTGAACAAAACAGTGGCATGTTTGGGAGATTCCGCTCTAGGCACAACAGGGCAGCATCTCTTAATGAGGAAATTCTAAGTTGCCGTGGGGTTGATCTGTGCACATCAACTATAAAGATGGATGCAGATGATTCAGATCTTCGACTTTGCTTTCGCATAATTTCCCCATCCAAAACATACACACTGCAGGCTGAAAATGAAGCTGATAGGATGGACTGGGTAAATAAAATTACTGGAGCTATTACATCACTGTTCAACTCTCAGTTTCTTCAACAGCCTAATCGGGTTGGATTGCATCAAGAAAATGAGAAATCAGCCATCAGTGCTTCATGCAATAGTCAATTGCAGCATAGCCATGGATCTTTGACTGAAGACATATATTCCAATGAAGTGGAGAGTGTGTCTAAAATTTTGTGGGGCATTCCTGGAAATAATAGGTGTGCCGAGTGTTGTGCAACTGAACCGGACTGGGCATCTCTTAACCTGGGAATATTGCTGTGTATTGAATGCTCTGGTGTTCATCGAAATCTTGGAGTTCACATATCAAAGGTGAGATCCATAACATTAGACGTCAAGGTTTGGGAACCTACTGTTCTGGACTTATTCCGGAACTTGGGTAATGCATATTGTAATTCCATATGGGAGGGATTGCTACATGACAATGAAAGGAAAAATGAGTCAAATGCACCAATTAAACCATGCCCCACAGACGCCTTCCAAGAGAAGGAAAAGTACATCCATGCGAAGTACGTGGAGAAGTCACTAATCCATAAAGAGACTGTACCCGGGAGCCCTTCTTTTGCCCTAAGAATCTGGCAAGCAGTTCAGGCTTTGAACATACGAGAAGTGTATCGCCTCATTGTCACTTCAGATGAAACTCTGGTAAACACCAAATATGATGATATCGTTCACCATGCTGAGGCAGAAAATTTGGATTTAAGATGTAGCGCAACTGAAAGCCAAGATCCTGATAATCATGTGAGCTGTCTCCAAGGTTGTTCACTGTTGCATCTGGCATGTCATTCTGACAGTGACCTAATGGTTGAGTTGTTGCTTCAATTTGGTGCCGATGTAAATGTGCGTGACTCCCATGGAAAGACTCCCTTGCACCATTGCATTTCTAGAGGGAAAAATCCTTTGGCAAAGCTTCTACTTCGACTTCGAAGGGGTGCAAGACCTTCCATTAAAGATGGTGATGGGTTCACTGCACTTGAAAGAGCAATGGAGATGGGAGCAATAACTGATGAAGAGCTATTTATTTTGCTAGCCGAATCCGCTTAA 2193 0.4236 MAALGEAYNGDIAFADALEVFGGGQDDPVSVSIGGPVISKFIGALRELASFKELLRSQVEHVLIDRLAQFMNVDLRDAKDSRARFDKAVHSYDQAREKFVSLKKNTREDIVAGVEEGLLNSKSAFEKSRFNLVNSLMNIEVKKKYEFLESFSAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANVEQDKLAKRIQEYRTQAELDNTRASSNADTLFGADGSRVVGLNSYKSSEVGIQSVPQGECQTVKQGYLLKRSSRLRGDWKRRFFVLDNQGSLYYYRAKGAKAMGSQSYNYTRSTEQNSGMFGRFRSRHNRAASLNEEILSCRGVDLCTSTIKMDADDSDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAITSLFNSQFLQQPNRVGLHQENEKSAISASCNSQLQHSHGSLTEDIYSNEVESVSKILWGIPGNNRCAECCATEPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTVLDLFRNLGNAYCNSIWEGLLHDNERKNESNAPIKPCPTDAFQEKEKYIHAKYVEKSLIHKETVPGSPSFALRIWQAVQALNIREVYRLIVTSDETLVNTKYDDIVHHAEAENLDLRCSATESQDPDNHVSCLQGCSLLHLACHSDSDLMVELLLQFGADVNVRDSHGKTPLHHCISRGKNPLAKLLLRLRRGARPSIKDGDGFTALERAMEMGAITDEELFILLAESA 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1223g00002 730 ProSiteProfiles Ankyrin repeat region circular profile. 635 666 - -
Pral1223g00002 730 PANTHER CENTAURIN/ARF 3 728 IPR045258 GO:0005096
Pral1223g00002 730 Gene3D Arf GTPase activating protein 418 565 IPR038508 -
Pral1223g00002 730 Gene3D - 577 726 IPR036770 -
Pral1223g00002 730 SUPERFAMILY Ankyrin repeat 623 717 IPR036770 -
Pral1223g00002 730 SMART 5bar 1 178 IPR004148 GO:0005515|GO:0005737
Pral1223g00002 730 SUPERFAMILY PH domain-like 245 397 - -
Pral1223g00002 730 SMART arf_gap_3 436 567 IPR001164 GO:0005096
Pral1223g00002 730 Pfam Putative GTPase activating protein for Arf 439 562 IPR001164 GO:0005096
Pral1223g00002 730 Gene3D Arfaptin homology (AH) domain/BAR domain 1 210 IPR027267 -
Pral1223g00002 730 ProSiteProfiles PH domain profile. 252 386 IPR001849 -
Pral1223g00002 730 Pfam BAR domain of APPL family 36 188 IPR004148 GO:0005515|GO:0005737
Pral1223g00002 730 ProSiteProfiles Ankyrin repeat profile. 635 667 IPR002110 GO:0005515
Pral1223g00002 730 CDD BAR_SFC_plant 1 175 IPR035670 -
Pral1223g00002 730 CDD PH_ACAP 255 390 - -
Pral1223g00002 730 Coils Coil 187 207 - -
Pral1223g00002 730 CDD ArfGap 440 554 - -
Pral1223g00002 730 ProSiteProfiles ARF GTPase-activating proteins domain profile. 436 567 IPR001164 GO:0005096
Pral1223g00002 730 Pfam Ankyrin repeats (3 copies) 640 716 IPR002110 GO:0005515
Pral1223g00002 730 Pfam PH domain 254 385 IPR001849 -
Pral1223g00002 730 SUPERFAMILY BAR/IMD domain-like 3 275 IPR027267 -
Pral1223g00002 730 PRINTS HIV Rev interacting protein signature 448 467 IPR001164 GO:0005096
Pral1223g00002 730 PRINTS HIV Rev interacting protein signature 490 511 IPR001164 GO:0005096
Pral1223g00002 730 PRINTS HIV Rev interacting protein signature 467 484 IPR001164 GO:0005096
Pral1223g00002 730 SMART ANK_2a 668 699 IPR002110 GO:0005515
Pral1223g00002 730 SMART ANK_2a 635 664 IPR002110 GO:0005515
Pral1223g00002 730 SUPERFAMILY ArfGap/RecO-like zinc finger 436 561 IPR037278 -
Pral1223g00002 730 SMART PH_update 253 388 IPR001849 -
Pral1223g00002 730 Gene3D - 248 402 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1223g00002 Pral-Chr1223 2794 26203 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1223g00002 446 554 C2H2 Transcription Factor Family AT4G05330 42.727 2.39e-20 91.3