Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1223g00001 ATGGCATCGGCCTTTATCAAACTGGATGATTCCCCCATGTTTCAGAAGCAGATATGTTCTCTTGAAGAAACGACTGATGAGTTAGCCGATCGATGCCAGAAACTATACAGAGGGTGCAAGAAATTTATGGCAGCTTTAGGAGAAGCTTATAATGGAGACATTGCCTTTGCTGATGCATTAGAAGTATTTGGTGGGGGGCAGGATGATCCTGTTAGTGTATCAATTGGAGGACCTGTCATATCTAAATTTATTGGTGCACTTCGTGAACTTGCATCTTTTAAAGAGCTTCTCCGGTCACAGGTGGAGCATGTGTTGATCGACCGGTTGGCGCAGTTTATGAATGTTGATTTACGAGATGCAAAGGATTCTCGTGCTCGTTTTGACAAAGCTGTTCATTCATATGATCAGGCACGAGAAAAATTTGTGTCTTTGAAGAAGAATACACGGGAAGACATTGTTGCTGGAGTAGAAGAGGGTCTTCTGAATTCAAAGTCAGCTTTTGAGAAAAGTCGCTTTAATCTAGTAAACTCACTCATGAACATTGAAGTGAAAAAGAAGTATGAGTTCTTGGAGTCCTTTAGTGCAATAATGGATGCCCATCTTAGATACTTCAAGCTGGGTTATGACTTACTGAGCCAAATGGAACCTTATATTCACCAGGTACTAACATATGCACAACAATCTAAAGAGCTGGCTAATGTTGAACAAGATAAGCTTGCAAAACGAATTCAGGAATATAGAACACAAGCTGAGCTGGACAACACACGAGCTTCTAGTAATGCTGATACTTTATTTGGTGCTGACGGCAGCCGTGTTGTTGGGTTGAACTCATACAAGAGCTCTGAAGTAGGGATCCAGTCTGTGCCCCAAGGTGAGTGTCAAACAGTTAAGCAAGGCTATCTGCTAAAACGATCCTCAAGATTGCGTGGAGATTGGAAGCGGAGGTTTTTTGTGCTTGACAACCAAGGGAGTTTATATTACTATAGAGCGAAGGGAGCCAAGGCTATGGGCTCTCAATCATATAATTATACTAGATCAACTGAACAAAACAGTGGCATGTTTGGGAGATTCCGCTCTAGGCACAACAGGGCAGCATCTCTTAATGAGGAAATTCTAAGTTGCCGTGGGGTTGATCTGTGCACATCAACTATAAAGATGGATGCAGATGATTCAGATCTTCGACTTTGCTTTCGCATAATTTCCCCATCCAAAACATACACACTGCAGGCTGAAAATGAAGCTGATAGGATGGACTGGGTAAATAAAATTACTGGAGCTATTACATCACTGTTCAACTCTCAGTTTCTTCAACAGCCTAATCGGGTTGGATTGCATCAAGAAAATGAGAAATCAGCCATCAGTGCTTCATGCAATAGTCAATTGCAGCATAGCCATGGATCTTTGACTGAAGACATATATTCCAATGAAGTGGAGAGTGTGTCTAAAATTTTGTGGGGCATTCCTGGAAATAATAGGTGTGCCGAGTGTTGTGCAACTGAACCGGACTGGGCATCTCTTAACCTGGGAATATTGCTGTGTATTGAATGCTCTGGTGTTCATCGAAATCTTGGAGTTCACATATCAAAGGTGAGATCCATAACATTAGACGTCAAGGTTTGGGAACCTACTGTTCTGGACTTATTCCGGAACTTGGGTAATGCATATTGTAATTCCATATGGGAGGGATTGCTACATGACAATGAAAGGAAAAATGAGTCAAATGCACCAATTAAACCATGCCCCACAGACGCCTTCCAAGAGAAGGAAAAGTACATCCATGCGAAGTACGTGGAGAAGTCACTAATCCATAAAGAGACTGTACCCGGGAGCCCTTCTTTTGCCCTAAGAATCTGGCAAGCAGTTCAGGCTTTGAACATACGAGAAGTGTATCGCCTCATTGTCACTTCAGATGAAACTCTGGTAAACACCAAATATGATGATATCGTTCACCATGCTGAGGCAGAAAATTTGGATTTAAGATGTAGCGCAACTGAAAGCCAAGATCCTGATAATCATGTGAGCTGTCTCCAAGGTTGTTCACTGTTGCATCTGGCATGTCATTCTGACAGTGACCTAATGGTTGAGTTGTTGCTTCAATTTGGTGCCGATGTAAATGTGCGTGACTCCCATGGAAAGACTCCCTTGCACCATTGCATTTCTAGAGGGAAAAATCCTTTGGCAAAGCTTCTACTTCGACTTCGAAGGGGTGCAAGACCTTCCATTAAAGATGGTGATGGGTTCACTGCACTTGAAAGAGCAATGGAGATGGGAGCAATAACTGATGAAGAGCTATTTATTTTGCTAGCCGAATCCGCTTAA 2319 0.4239 MASAFIKLDDSPMFQKQICSLEETTDELADRCQKLYRGCKKFMAALGEAYNGDIAFADALEVFGGGQDDPVSVSIGGPVISKFIGALRELASFKELLRSQVEHVLIDRLAQFMNVDLRDAKDSRARFDKAVHSYDQAREKFVSLKKNTREDIVAGVEEGLLNSKSAFEKSRFNLVNSLMNIEVKKKYEFLESFSAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANVEQDKLAKRIQEYRTQAELDNTRASSNADTLFGADGSRVVGLNSYKSSEVGIQSVPQGECQTVKQGYLLKRSSRLRGDWKRRFFVLDNQGSLYYYRAKGAKAMGSQSYNYTRSTEQNSGMFGRFRSRHNRAASLNEEILSCRGVDLCTSTIKMDADDSDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAITSLFNSQFLQQPNRVGLHQENEKSAISASCNSQLQHSHGSLTEDIYSNEVESVSKILWGIPGNNRCAECCATEPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTVLDLFRNLGNAYCNSIWEGLLHDNERKNESNAPIKPCPTDAFQEKEKYIHAKYVEKSLIHKETVPGSPSFALRIWQAVQALNIREVYRLIVTSDETLVNTKYDDIVHHAEAENLDLRCSATESQDPDNHVSCLQGCSLLHLACHSDSDLMVELLLQFGADVNVRDSHGKTPLHHCISRGKNPLAKLLLRLRRGARPSIKDGDGFTALERAMEMGAITDEELFILLAESA 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1223g00001 772 SMART PH_update 295 430 IPR001849 -
Pral1223g00001 772 Pfam PH domain 296 427 IPR001849 -
Pral1223g00001 772 Gene3D Arf GTPase activating protein 460 607 IPR038508 -
Pral1223g00001 772 Gene3D - 619 768 IPR036770 -
Pral1223g00001 772 ProSiteProfiles ARF GTPase-activating proteins domain profile. 478 609 IPR001164 GO:0005096
Pral1223g00001 772 ProSiteProfiles Ankyrin repeat profile. 677 709 IPR002110 GO:0005515
Pral1223g00001 772 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Pral1223g00001 772 SMART ANK_2a 710 741 IPR002110 GO:0005515
Pral1223g00001 772 SMART ANK_2a 677 706 IPR002110 GO:0005515
Pral1223g00001 772 ProSiteProfiles PH domain profile. 294 428 IPR001849 -
Pral1223g00001 772 Pfam BAR domain of APPL family 8 230 IPR004148 GO:0005515|GO:0005737
Pral1223g00001 772 SUPERFAMILY ArfGap/RecO-like zinc finger 478 603 IPR037278 -
Pral1223g00001 772 Coils Coil 229 249 - -
Pral1223g00001 772 CDD PH_ACAP 297 432 - -
Pral1223g00001 772 PANTHER CENTAURIN/ARF 4 770 IPR045258 GO:0005096
Pral1223g00001 772 SUPERFAMILY PH domain-like 287 439 - -
Pral1223g00001 772 ProSiteProfiles Ankyrin repeat region circular profile. 677 708 - -
Pral1223g00001 772 SMART arf_gap_3 478 609 IPR001164 GO:0005096
Pral1223g00001 772 CDD BAR_SFC_plant 16 217 IPR035670 -
Pral1223g00001 772 CDD ArfGap 482 596 - -
Pral1223g00001 772 Gene3D Arfaptin homology (AH) domain/BAR domain 7 252 IPR027267 -
Pral1223g00001 772 Pfam Ankyrin repeats (3 copies) 682 758 IPR002110 GO:0005515
Pral1223g00001 772 SUPERFAMILY BAR/IMD domain-like 8 317 IPR027267 -
Pral1223g00001 772 PRINTS HIV Rev interacting protein signature 490 509 IPR001164 GO:0005096
Pral1223g00001 772 PRINTS HIV Rev interacting protein signature 509 526 IPR001164 GO:0005096
Pral1223g00001 772 PRINTS HIV Rev interacting protein signature 532 553 IPR001164 GO:0005096
Pral1223g00001 772 Pfam Putative GTPase activating protein for Arf 481 604 IPR001164 GO:0005096
Pral1223g00001 772 SUPERFAMILY Ankyrin repeat 665 759 IPR036770 -
Pral1223g00001 772 Gene3D - 290 444 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1223g00001 Pral-Chr1223 2794 26668 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1223g00001 488 596 C2H2 Transcription Factor Family AT4G05330 42.727 2.85e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1223g00001 K12489 - gmx:100796006 1165.21