Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1217g00004 ATGGAGAATCCGTTTGACTTCGACTTTACCACCGGTTATCCTGAGCAGTCACCAATGGTTCCATCATGGCAACCGACCGGTTTCCAAGAGGAATTCACGTCACAGTCTCACTACGTGGCTCCTGTAAGCTGGGCATCCTCAATTGGACCGGAGCAATTAGCACAGTCCATTTCTTCTTCATCGGCGGTAGATGCTCCGTCGTCACTGATGGTGAAGGTTCAGAGAGTGGAAGCCCGATTGGACGAGGACGAGCAGGATTCTAAAAAACTTCGCGCTAAAATCTTTTGCCATCCTTTGTATCCTAAACTTCTGGATGCTTACATCGATTGCCAAAAGGTTGGAGCACCGCCGGAGATGGCAAAACTGTTCGACGAAATCGGACTAGAGAATGGCGATCTATGTCAGAGATCTACTTACTTGGGTGCCGACCCCGAGCTGGATGAATTCATGGAAACGTATTGCGATTTATTGGTGAAGCACAAATCGGATCTCTCGAAGCCTTTTGATGAAGCAACCGCGTTTCTTAACGACATGGAAATGCAGCTTAACTCTCTCTGCAACGGCCCTCCCCGGAACTGCAATTCTGATGAAGGTACTGGATCATCCGATGATGACACCAGTAGGGAAGAGAAAGAAGAAAACGAGTCTAAGAGGATCATTGAAGATCGAGAGTTGAAGGATAAACTCCTTCGTAGATATAGCGGATATATTATTGGTCTCAAGCATGAATTTTCCAAAAAGAAGAAGAAAGAGAAGCTACCCAAAGAAGCGAGGCAAATATTGCTTGCATGGTGGAATATTCACTTCAAATGGCCATACCCGACGGAAGCGGATAAGGTTGCATTAGCTGAATGGACGGGTCTGGATCAAAAGCAGATAAACAATTGGTTTATAAACCAGAGGAAGCGCCACTGGAAGCCAGCGGAGGAAATGCAAGCAGCAGTTTTGGATGGCCTATATGGACCTTTTTCCACGAGTGATTGA 984 0.4644 MENPFDFDFTTGYPEQSPMVPSWQPTGFQEEFTSQSHYVAPVSWASSIGPEQLAQSISSSSAVDAPSSLMVKVQRVEARLDEDEQDSKKLRAKIFCHPLYPKLLDAYIDCQKVGAPPEMAKLFDEIGLENGDLCQRSTYLGADPELDEFMETYCDLLVKHKSDLSKPFDEATAFLNDMEMQLNSLCNGPPRNCNSDEGTGSSDDDTSREEKEENESKRIIEDRELKDKLLRRYSGYIIGLKHEFSKKKKKEKLPKEARQILLAWWNIHFKWPYPTEADKVALAEWTGLDQKQINNWFINQRKRHWKPAEEMQAAVLDGLYGPFSTSD 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1217g00004 327 Coils Coil 73 93 - -
Pral1217g00004 327 CDD homeodomain 258 307 IPR001356 GO:0003677
Pral1217g00004 327 MobiDBLite consensus disorder prediction 186 200 - -
Pral1217g00004 327 SUPERFAMILY Homeodomain-like 245 319 IPR009057 -
Pral1217g00004 327 SMART KNOX2_2 136 187 IPR005541 GO:0003677|GO:0005634
Pral1217g00004 327 ProSiteProfiles 'Homeobox' domain profile. 244 307 IPR001356 GO:0003677
Pral1217g00004 327 MobiDBLite consensus disorder prediction 186 217 - -
Pral1217g00004 327 Pfam Homeobox KN domain 264 303 IPR008422 GO:0003677|GO:0006355
Pral1217g00004 327 SMART HOX_1 246 311 IPR001356 GO:0003677
Pral1217g00004 327 MobiDBLite consensus disorder prediction 201 217 - -
Pral1217g00004 327 ProSitePatterns 'Homeobox' domain signature. 282 305 IPR017970 GO:0000981|GO:0006355
Pral1217g00004 327 SMART KNOX1_2 88 132 IPR005540 GO:0003677|GO:0005634
Pral1217g00004 327 Pfam ELK domain 224 245 IPR005539 GO:0003677
Pral1217g00004 327 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 101 313 - -
Pral1217g00004 327 MobiDBLite consensus disorder prediction 1 26 - -
Pral1217g00004 327 Pfam KNOX2 domain 141 186 IPR005541 GO:0003677|GO:0005634
Pral1217g00004 327 Pfam KNOX1 domain 90 129 IPR005540 GO:0003677|GO:0005634
Pral1217g00004 327 ProSiteProfiles ELK domain profile. 224 244 IPR005539 GO:0003677
Pral1217g00004 327 SMART ELK_2 224 245 IPR005539 GO:0003677
Pral1217g00004 327 Gene3D - 242 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1217g00004 Pral-Chr1217 38457 46630 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1217g00004 1 325 Homeobox Transcription Factor Family AT1G23380 50.595 6.48e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pral1217g00004 KNOX2 5.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1217g00004 - - qsa:O6P43_022694 364.385