Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral1214g00008 ATGGTTCAGTTTCATTCCTTCGATTTTGCCTGGTGGAAGCTGGTGGAACTTCTCCGAAAATGTCGAAATTCAAGATTCGGCCAAACCCGTCACTGTGTGGCGCGCTCTTGCCAAAATGTGGCAACTTGTTGCTCAAGACCGATGGATTATTTTCTCTGCATTCTCTGCTCTCATTCTTGCAGCGGTTTCGGAGATTTCCATACCGCATTTCTTAACAGCTTCTATCTTCTCCGCACAGAGCGCGGATGTTACAGTTTTCCGGCGCCATGTGCTTCTCTTGGTTCTGTTCTGTATAACTTCGGGAATATGCAGGTCAAAATCTTTGGGATAAGAGGCTGCTGTTTTGGAATTGCAAATATGATACTGGTAAAAAGAATGCGAGAAACATTATACTCCTCCCTTCTTCTTCAGGATATATCATTTTTTGACGATGTAACAGTTGGTGATCTGACAAGTAGGCTTGGTGCTGATTGCCAACAAGTTTCACGTGTTATTGGAAATGATCTTAACTTGATATTGCGCAACGTTCTTCAGGGAACAGGTGCATTGACCTACTTGTTATTTTTGTCTTGGCCACTTGGTTTATTTACATTGATGATATGCTCTATATTATCAGCAGTTTTGCTACTTTATGGAAGGTACCAGAAAAAGGCTGCAAAGTTGATCCAAGAAGTCACTGCTTCTGCTAATGAAGTTGCACAAGAGACATTTTCTCTGATTAGAACTGTCCGTGTTTATGGAACAGAAGAAGAGGAACTTGGAAGGTACAAATGGTGGCTGGGAAAGTTAGCTGATATAAGCTTGAGACAAAGTGCTGCGTATGGATTTTGGAATTTCAGCTTCAATAATCTTTATCATTCAACTCAGGTTATCGCCGTGCTGTTTGGAGGAATGTCTATTCTAGCAGGTCATATTACAGCAGAGAAACTTACTAAGTTTATACTATACAGTGAATGGCTTATTTATTCAACCTGGTGGGTGGGGGACAGTATATCATCTTTGATGCAATCTGTCGGGGCTAGTGAAAAAGTATTTCACCTGATGGATCTCTCACCTAGCAGTCAGTTCCGTGCAAAAGGAGTAAAGCTGCAGAGGTTACTTGGGAATATTGAATTTATAAATGTATCTTTTCACTATCCTTCAAGGCCAATGGTATCTGTAGTGCGGCATGTAAATTTTGCTGTTCGACCTGGTGAGGTGGTTGCCATAGCTGGTCTTAGTGGCAGTGGAAAAAGTACACTGGTGAACCTTCTGCTCCGCTTATATGAGCCCACCAATGGTCAGATTTTGGTTGATGGCGTCCCTCTTAAAGAGTTGGACATCATGTGGTGGAGAGAAAGAATTGCATTTGTTGGACAGGAACCTAAGCTCTTCAGAATGGATATTAGTTCAAACATAAGATATGGATGCACTCGAGAGATTAAGCAGGAGGATGTTGAATGGGCTGCAAAGCAAGCTTATGCCCATGACTTCATCTCAGCACTTCCTAATGGCTATGAAACACTTGTTGATGATGATTTGTTAAGTGGGGGACAAAAGCAGCGAATTGCTATTGCTAGAGCTATTCTTAGGGATCCAAAAATATTGATCCTTGATGAAGCCACAAGTGCGCTGGATGCTGAGAGTGAGCATAATGTCAAGGGTGTTCTTCGTTCTGTTAAAAATGACTCCCTGAGTATGAGAAGTGTTATTGTAATTGCACACAGGCTTTCTACCATACAAGCAGCAGACAGGATTGTGGTCATGGATAGCGGTAAAATTGTTGAGATTGGGAGTCACAGTGAACTTCTCTTAAGAGATGGTTTATATGCACGATTGACCAGTAAACAGGCTGACTCGGTGGCATGA 1848 0.4205 MVQFHSFDFAWWKLVELLRKCRNSRFGQTRHCVARSCQNVATCCSRPMDYFLCILCSHSCSGFGDFHTAFLNSFYLLRTERGCYSFPAPCASLGSVLYNFGNMQVKIFGIRGCCFGIANMILVKRMRETLYSSLLLQDISFFDDVTVGDLTSRLGADCQQVSRVIGNDLNLILRNVLQGTGALTYLLFLSWPLGLFTLMICSILSAVLLLYGRYQKKAAKLIQEVTASANEVAQETFSLIRTVRVYGTEEEELGRYKWWLGKLADISLRQSAAYGFWNFSFNNLYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDSISSLMQSVGASEKVFHLMDLSPSSQFRAKGVKLQRLLGNIEFINVSFHYPSRPMVSVVRHVNFAVRPGEVVAIAGLSGSGKSTLVNLLLRLYEPTNGQILVDGVPLKELDIMWWRERIAFVGQEPKLFRMDISSNIRYGCTREIKQEDVEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARAILRDPKILILDEATSALDAESEHNVKGVLRSVKNDSLSMRSVIVIAHRLSTIQAADRIVVMDSGKIVEIGSHSELLLRDGLYARLTSKQADSVA 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral1214g00008 615 Gene3D - 368 611 IPR027417 -
Pral1214g00008 615 ProSitePatterns ABC transporters family signature. 508 522 IPR017871 GO:0005524|GO:0016887
Pral1214g00008 615 SUPERFAMILY ABC transporter transmembrane region 108 350 IPR036640 GO:0005524|GO:0016020
Pral1214g00008 615 Gene3D ABC transporter type 1, transmembrane domain 112 367 IPR036640 GO:0005524|GO:0016020
Pral1214g00008 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 610 IPR027417 -
Pral1214g00008 615 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 370 609 IPR003439 GO:0005524
Pral1214g00008 615 PANTHER ABC TRANSPORTER B FAMILY 100 606 IPR039421 -
Pral1214g00008 615 Pfam ABC transporter 389 536 IPR003439 GO:0005524
Pral1214g00008 615 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 110 336 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral1214g00008 615 Pfam ABC transporter transmembrane region 106 321 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral1214g00008 615 CDD ABC_6TM_TAP 109 344 - -
Pral1214g00008 615 FunFam Multidrug ABC transporter ATP-binding protein 362 614 - -
Pral1214g00008 615 SMART AAA_5 397 586 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral1214g00008 Pral-Chr1214 39718 46031 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral1214g00008 125 610 Calmodulin-binding Proteins AT2G36910 33.535 3.13e-70 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral1214g00008 - - pcin:129311051 1138.25